PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_000376-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 351aa    MW: 39342.3 Da    PI: 4.6388
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_000376-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.6e-2746139185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rWt+qe+l+Li+++r  e+r+rrg+         + +p+W  vs++++++g++r+p+qC+++w+nl++++kki+e+e++ t+es+s + + +++
  AHYPO_000376-RA  46 RWTRQEILVLIQGKRVAETRVRRGRtaglqdgeiQVEPKWMTVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKINEWESQITDESESFWMLRNDV 139
                      8**********************98888999999***********************************************9999999887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.21446112IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-446111IPR009057Homeodomain-like
PfamPF138371.9E-1046134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAQQGQEEED EEEEVTLSMT SKSVNVDSNG DDGGNRGGGK AARLPRWTRQ EILVLIQGKR  60
VAETRVRRGR TAGLQDGEIQ VEPKWMTVSS YCKRHGVNRG PVQCRKRWSN LAGDFKKINE  120
WESQITDESE SFWMLRNDVR RERKLPGFFD KEVFDILSSN SEIPVVHVES DNPNLKSGEI  180
EAVFDSGRSA TGDDGLFSDF ENQRERNQDE QDDDDLGRRI ENVGDGQIQV HDEHPLVNSS  240
VPDPIPISGA ETNQEKQQVG LNPEIGSTSG EAAGRKRRRT LDEEEGGIHL QAQDELIQVL  300
ERNGRVLSAQ LDAYNLNHKL DREERKENTS SLVVVLNKLA DAMGRIADKL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274278RKRRR
2274279RKRRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021746010.11e-124trihelix transcription factor ASR3-like
SwissprotQ8VZ206e-98ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A1Q3BVU81e-115A0A1Q3BVU8_CEPFO; Myb_DNA-bind_4 domain-containing protein
STRINGevm.model.supercontig_2461.11e-113(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-96Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]