PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_000143-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 425aa MW: 47117.5 Da PI: 6.2613 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.6e-32 | 250 | 304 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ AHYPO_000143-RA 250 KTRIRWTTDLHEKFVECVNRLGGADKATPKAILKLMNADGLTIFHVKSHLQKYRI 304 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.393 | 247 | 307 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.47E-17 | 248 | 304 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.8E-29 | 248 | 305 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 250 | 305 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-9 | 254 | 303 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-19 | 334 | 381 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MSNQKIDFRE QVQESNGVIS DCMVELGSKD SQFMSIREPW NMGNCMGGGV DSLQPQNVLP 60 VNLSTTIASR FCPPVPGFSA PERYAGLPYD QQINNATFSS RCSRNYDLDY RSYPCSTEGF 120 SADLAEPEGS DLQSRSTVQA AAKSLLYGDQ TQFYAPVKTF GGPCSNYSGS DHIQQLKNKL 180 FVDFANSDGR NYLFPINEKQ DLSILDKSYD SPHCQLSFSC QGDKQGLNPL GVVPLNSGNS 240 FSSGASVSSK TRIRWTTDLH EKFVECVNRL GGADKATPKA ILKLMNADGL TIFHVKSHLQ 300 KYRIAKYMPN SNEGKSDRSS SLNDVTQLDA KAGIQLKEAL QLQLDVQRRL HEQLEIQRNL 360 QRRIEEQGRQ LKMMFDQQQK TRQTLLGDQS SDNMSPNGPS FSLDEVQLSS EEGSGCNNFQ 420 SKIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-23 | 250 | 307 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-23 | 250 | 307 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-23 | 250 | 307 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-23 | 250 | 307 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 250 | 307 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021723996.1 | 0.0 | myb family transcription factor PHL5-like | ||||
TrEMBL | A0A0K9RV66 | 0.0 | A0A0K9RV66_SPIOL; Uncharacterized protein | ||||
STRING | XP_010672678.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-73 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_000143-RA |