PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_000106-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 281aa MW: 31070.7 Da PI: 7.3043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_000106-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.8	1.7e-07	171	197	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN ++ L+el+P + AHYPO_000106-RA 171 SHSLAERARREKINARMKLLQELVPGC 197 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.05E-4	165	199	No hit	No description
SuperFamily	SSF47459	4.58E-8	165	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.381	167	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-8	170	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-5	171	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MENYQFGEEF QKLMIAPENG NGNGNSFTAL LGLPPNQAME LLTEDSAGIG GGGDVVKRHR 60 ISAFNHSLSS LPAFPSNQAL IERAAKYSVF ATEKDSLELK VKSEPLDSGS NPNCSDPTGG 120 SESEKEKPLK RKEREKKGKG SAKKNKTTTS EDVEKLPYVH VRARRGQATD SHSLAERARR 180 EKINARMKLL QELVPGCNKV ESAMDCNFPN VAMPIMWPEV HLNADRQQFQ QQWHADSSSH 240 QVWVKEENHR NLVPSENSHM SYDSPANSAS LPSSQLKMEL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021724053.1	1e-130	transcription factor bHLH48-like isoform X1
Swissprot	Q3EAI1	3e-41	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A0K9QKV5	1e-118	A0A0K9QKV5_SPIOL; Uncharacterized protein
STRING	XP_010672733.1	1e-128	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-44	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_000106-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]