PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.9962s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 848aa MW: 92698.3 Da PI: 6.1499

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.9962s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Araha.9962s0002.1.p 20 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5678*****************************************************97 PP
2	START	190.5	8.2e-60	169	377	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++tl vi g g Araha.9962s0002.1.p 169 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGngG 257 799*****************************************************.8888888888**************999 PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p sss+vRae++pSg+li+p+++g+s +++v+hvdl+++ Araha.9962s0002.1.p 258 TIELIYTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPVgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLDAW 347 *********************************************999999********************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqce 205 ++++++r+l++s+ + ++k++va+l++ ++ Araha.9962s0002.1.p 348 SVPEVMRPLYESSKILAQKMTVAALRHVRQ 377 ***********************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.321	15	79	IPR001356	Homeobox domain
SMART	SM00389	5.7E-15	17	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-17	19	83	IPR009057	Homeodomain-like
CDD	cd00086	4.07E-16	20	80	No hit	No description
Pfam	PF00046	6.4E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-18	22	78	IPR009057	Homeodomain-like
CDD	cd14686	5.44E-6	72	111	No hit	No description
PROSITE profile	PS50848	26.98	159	387	IPR002913	START domain
CDD	cd08875	3.09E-75	163	379	No hit	No description
Gene3D	G3DSA:3.30.530.20	2.8E-22	167	373	IPR023393	START-like domain
SMART	SM00234	1.4E-62	168	378	IPR002913	START domain
SuperFamily	SSF55961	4.12E-36	168	380	No hit	No description
Pfam	PF01852	4.7E-57	169	377	IPR002913	START domain
SuperFamily	SSF55961	5.77E-6	416	497	No hit	No description
SuperFamily	SSF55961	5.77E-6	529	604	No hit	No description
Pfam	PF08670	3.4E-49	701	846	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009855	Biological Process	determination of bilateral symmetry
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence Send to blast
MMMVHTMNRE SPDKGLDSGK YVRYTPEQVE ALERVYTECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EAARLQTVNR KLNAMNKLLM EENDRLQKQV SHLVYENGHM 120 KQQLHTSSGT TTDNSCESVV VSGQQHQQQN PNPQHQQRDA NNPAGLLSIA EEALAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR 240 DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYSTCLEDG SYVVCERSLT 300 SATGGPVGPP SSSFVRAEMR PSGFLIRPCE GGGSILHIVD HVDLDAWSVP EVMRPLYESS 360 KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF SQRLCRGFND AVNGFVDDGW 420 SPMGSDGAED ITVMINLSPG KFGGSQYGNS FLPSFGSGVL CAKASMLLQN VPPAVLVRFL 480 REHRSEWADY GVDAYAAASL RASPFAVPCA RAGGFPSNQV ILPLAQTVEH EESLEVVRLE 540 GHAYSPEDMG LARDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRIIPL 600 EQKSTPNGAS ANRTLDLASA LEGSTRQAGE ADPNGCNFRS VLTIAFQFTF DNHSRDSVAS 660 MARQYVRSIV GSIQRVALAI APRPGSNISP ISVPTSPEAL TLVRWISRSY SLHTGADLFG 720 SDSQTSGDTL LHQLWNHTDA ILCCSLKTNA SPVFTFANQT GLDMLETTLV ALQDIMLDKT 780 LDEPGRKALC SEFPKIMQQG YAHLPAGVCA SSMGRMVSYE QATVWKVLED DESNHCLAFM 840 FVNWSFV*

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence Send to blast

MMMVHTMNRE SPDKGLDSGK YVRYTPEQVE ALERVYTECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EAARLQTVNR KLNAMNKLLM EENDRLQKQV SHLVYENGHM  120
KQQLHTSSGT TTDNSCESVV VSGQQHQQQN PNPQHQQRDA NNPAGLLSIA EEALAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAISRNC SGIAARACGL VSLEPMKVAE ILKDRPSWLR  240
DCRCVDTLSV IPAGNGGTIE LIYTQMYAPT TLAAARDFWT LRYSTCLEDG SYVVCERSLT  300
SATGGPVGPP SSSFVRAEMR PSGFLIRPCE GGGSILHIVD HVDLDAWSVP EVMRPLYESS  360
KILAQKMTVA ALRHVRQIAQ ETSGEVQYGG GRQPAVLRTF SQRLCRGFND AVNGFVDDGW  420
SPMGSDGAED ITVMINLSPG KFGGSQYGNS FLPSFGSGVL CAKASMLLQN VPPAVLVRFL  480
REHRSEWADY GVDAYAAASL RASPFAVPCA RAGGFPSNQV ILPLAQTVEH EESLEVVRLE  540
GHAYSPEDMG LARDMYLLQL CSGVDENVVG GCAQLVFAPI DESFADDAPL LPSGFRIIPL  600
EQKSTPNGAS ANRTLDLASA LEGSTRQAGE ADPNGCNFRS VLTIAFQFTF DNHSRDSVAS  660
MARQYVRSIV GSIQRVALAI APRPGSNISP ISVPTSPEAL TLVRWISRSY SLHTGADLFG  720
SDSQTSGDTL LHQLWNHTDA ILCCSLKTNA SPVFTFANQT GLDMLETTLV ALQDIMLDKT  780
LDEPGRKALC SEFPKIMQQG YAHLPAGVCA SSMGRMVSYE QATVWKVLED DESNHCLAFM  840
FVNWSFV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269\|PubMed:11395776, ECO:0000269\|PubMed:15328016, ECO:0000269\|PubMed:15598805}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.9962s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by miR165 and miR166. {ECO:0000269\|PubMed:14999284, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:17237362}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441291	0.0	AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene).
GenBank	AY099791	0.0	AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
GenBank	BT000335	0.0	BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884308.1	0.0	homeobox-leucine zipper protein ATHB-14
Swissprot	O04291	0.0	ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBL	D7LH38	0.0	D7LH38_ARALL; Uncharacterized protein
STRING	scaffold_402060.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4256	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Araha.9962s0002.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Müller CJ, et al. PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis. Plant Physiol., 2016. 170(2): p. 956-70 [PMID:26637548] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Kim ES, et al. HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots. Physiol Plant, 2016. 157(2): p. 221-33 [PMID:26968317] Husbands AY,Aggarwal V,Ha T,Timmermans MC In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes. Plant Cell, 2016. 28(8): p. 1783-94 [PMID:27385814] Di Ruocco G, et al. Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development, 2018. [PMID:29158439] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(5): p. 1017-1026 [PMID:29462472]