PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9941s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 371aa    MW: 41916.4 Da    PI: 6.5111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9941s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-184794148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ +v+++G g W+t + + g++R++k+c++rw +yl
  Araha.9941s0006.1.p 47 KGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 94
                         79********************************************97 PP
2Myb_DNA-binding55.81.1e-17100144147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +++eE++ ++++++ +G++ W++Iar+++ +Rt++++k++w+++
  Araha.9941s0006.1.p 100 RGEFSQEEEDSIINLHAIHGNK-WSAIARKLP-RRTDNEIKNHWNTH 144
                          899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-243897IPR009057Homeodomain-like
PROSITE profilePS5129417.3724294IPR017930Myb domain
SuperFamilySSF466891.87E-2944141IPR009057Homeodomain-like
SMARTSM007172.4E-134696IPR001005SANT/Myb domain
PfamPF002495.8E-164794IPR001005SANT/Myb domain
CDDcd001671.51E-94994No hitNo description
PROSITE profilePS5129426.08395149IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2598150IPR009057Homeodomain-like
SMARTSM007172.5E-1699147IPR001005SANT/Myb domain
PfamPF002491.3E-15100144IPR001005SANT/Myb domain
CDDcd001671.83E-11102145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009625Biological Processresponse to insect
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MIDPSQAHKN NISLSLFLDL AYIINTFKNQ ESRMVRTPCC RAEGLKKGAW TQEEDQKLIA  60
YVQRHGEGGW RTLPDKAGLK RCGKSCRLRW ANYLRPDIKR GEFSQEEEDS IINLHAIHGN  120
KWSAIARKLP RRTDNEIKNH WNTHIKKRLV KKGIDPLTHK FLHDGASKSS DYPETPHPEK  180
SSVRHEEDDQ NSNNKKSSGS SSARFLNRVA NRFGHRINHN VLSNIIGSSG LLTSHTTPTT  240
SVSECERSTS SSSTPTSSNL PMNNSITVDA TSLSSSTFSD SSDPFLYDDI FGDIEDMTRF  300
SSRCLSDVVS HDEEEFLMSD ESCLENTSFV RELAIIFRED KIETTSFNDS YVTLINEVDD  360
SFERIDNYIG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28451495108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9941s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719830.0AF371983.2 Arabidopsis thaliana putative transcription factor MYB122 (MYB122) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890176.10.0LOW QUALITY PROTEIN: transcription factor MYB122
SwissprotQ9C9C80.0MY122_ARATH; Transcription factor MYB122
TrEMBLD7KRY90.0D7KRY9_ARALL; MYB122
STRINGfgenesh2_kg.2__1680__AT1G74080.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74080.11e-179myb domain protein 122
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo R, et al.
    Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana.
    J. Exp. Bot., 2013. 64(18): p. 5707-19
    [PMID:24151308]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Frerigmann H,Gigolashvili T
    MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana.
    Mol Plant, 2014. 7(5): p. 814-28
    [PMID:24431192]
  5. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  6. Peskan-Berghöfer T, et al.
    Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots.
    New Phytol., 2015. 208(3): p. 873-86
    [PMID:26075497]
  7. Frerigmann H,Glawischnig E,Gigolashvili T
    The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 654
    [PMID:26379682]
  8. Frerigmann H, et al.
    Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products.
    Mol Plant, 2016. 9(5): p. 682-695
    [PMID:26802248]
  9. Stahl E, et al.
    Regulatory and Functional Aspects of Indolic Metabolism in Plant Systemic Acquired Resistance.
    Mol Plant, 2016. 9(5): p. 662-681
    [PMID:26802249]
  10. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  11. Xu J, et al.
    Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity.
    Plant Cell, 2016. 28(5): p. 1144-62
    [PMID:27081184]
  12. Miao H, et al.
    Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation.
    Sci Rep, 2016. 6: p. 31854
    [PMID:27549907]