PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.9920s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 252aa MW: 28335.5 Da PI: 9.9579 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.7e-12 | 61 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g Araha.9920s0005.1.p 61 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDDEQKAARAYDLAALKYWG 117 78*******************87776664447766.557777**************98 PP | |||||||
2 | AP2 | 48.7 | 1.8e-15 | 160 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Araha.9920s0005.1.p 160 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 211 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.48E-15 | 61 | 127 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.96E-17 | 61 | 127 | No hit | No description |
Pfam | PF00847 | 1.2E-8 | 61 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-22 | 62 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-13 | 62 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.201 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.58E-24 | 160 | 221 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-18 | 160 | 220 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-10 | 160 | 211 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 161 | 219 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 161 | 225 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 161 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 201 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MLSLALSHGA CSDLINETNA SVVPVEEPVK IDEKRKRLTG KSQEKDLVPR KSVDSFGQRT 60 SQYRGVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDD EQKAARAYDL AALKYWGPTT 120 HLNFPLSNYE KEIEELNNMN RQEFVAMLRR NSSGFSRGAS IYRGVTRHHQ HGRWQARIGR 180 VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI NRYDVKRICS SSTIVTSDQA 240 NRSPTSSGAG Q* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.9920s0005.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY603417 | 0.0 | AY603417.1 Arabidopsis thaliana AP2/EREBP transcription factor (At1g72570) mRNA, complete cds. | |||
GenBank | DQ446422 | 0.0 | DQ446422.1 Arabidopsis thaliana clone pENTR221-At1g72570 ovule development protein (At1g72570) mRNA, complete cds. | |||
GenBank | DQ652930 | 0.0 | DQ652930.1 Arabidopsis thaliana clone 0000013270_0000009577 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891434.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-168 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | D7KR17 | 0.0 | D7KR17_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_2001254 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11747 | 25 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-165 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.9920s0005.1.p |
Publications ? help Back to Top | |||
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