PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9698s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 244aa    MW: 27302.4 Da    PI: 5.341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9698s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.43.9e-06190212426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C++f  t  C++G++C + H+
  Araha.9698s0002.1.p 190 KPCMYFNSTRGCRHGANCLYQHD 212
                          69********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.098186214IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-4190212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4190213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.4E-5191223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG  60
PLSANESQIK LSDIPVIKWK SSVRILLDEE WRVVAGDESK EVEVQNQREL RVLEAFYPGA  120
SSIPPNPSVP ADVENHHDDQ QTIVIPILPV EDDDIAMDSA SDFPTQSGVD MVNSNNNNQR  180
PRDSKPKIMK PCMYFNSTRG CRHGANCLYQ HDATTPYQPR NLNNGNINTS EMQNAKRMRF  240
DRD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9698s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankAY0889590.0AY088959.1 Arabidopsis thaliana clone 111757 mRNA, complete sequence.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866996.11e-118zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU41e-112C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLD7KI691e-117D7KI69_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.1__2165__AT1G19860.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.27e-07HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]