PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9540s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 525aa    MW: 59621.8 Da    PI: 6.4689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9540s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81.1e-093674041954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+++e+  L+k++gL+++qV +WF N R +
  Araha.9540s0002.1.p 367 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 404
                          665559******************************88 PP
2BELL125.42.1e-40230301172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi
  Araha.9540s0002.1.p 230 ERQELQSKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 301
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-52163299IPR006563POX domain
PfamPF075261.1E-47169297IPR006563POX domain
PROSITE profilePS5007112.066345408IPR001356Homeobox domain
SMARTSM003891.9E-9348412IPR001356Homeobox domain
CDDcd000863.17E-11348409No hitNo description
SuperFamilySSF466892.91E-17349416IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-28351414IPR009057Homeodomain-like
PfamPF059201.8E-17365404IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAVYYPNSVG MQSLYQESIY LNEQQQQQQA SSSSAASFSE IVSGDVRNNE MVFIPPTSDV  60
AVNGNVTVSS NDLSFHGGGL SLSLGNQIQS AVSVSPFQYH YQNLSNQLSY NNLNPSTMSD  120
EDGKSLSGHH QQHHHSDQMI PSSGYNNNGN GVGFYNNYRY ETSGFVSSVL RSRYLKPTQQ  180
LLDEVVSVRK DLKLGNKKMK NDKGQDFQNG SSDNITEDEK SQSQELSPSE RQELQSKKSK  240
LLTMVDEVDK RYNQYHHQME ALASSFEMVT GLGAAKPYTS VALNRISRHF RCLRDAIKEQ  300
IQVIRGKLGE RETSDEQGER IPRLRYLDQR LRQQRALHQQ LGMVRPAWRP QRGLPENSVS  360
ILRAWLFEHF LHPYPKESEK IMLSKQTGLS KNQVANWFIN ARVRLWKPMI EEMYKEEFGD  420
SAELLSNSNQ DTNKMQETSQ LKHEDSSSSQ QQNQGNNNNI PYTSDAEENL VFADPKPDRA  480
TTGDFDSLMN YHGFGIDDYN RYVGLGNQQD GRYSNPHQLH DFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15354412563Homeobox protein Meis2
3k2a_B1e-15354412563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9540s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530930.0AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds.
GenBankAY0852780.0AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence.
GenBankAY5984520.0AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889947.10.0BEL1-like homeodomain protein 3
RefseqXP_020889948.10.0BEL1-like homeodomain protein 3
SwissprotQ9FWS90.0BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLD7KSP00.0D7KSP0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1821__AT1G75410.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38201959
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.20.0BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]