PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9536s0010.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 351aa    MW: 39844 Da    PI: 4.1879
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9536s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731093.3e-3450144397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          +++ ws++De+v+L G++d++++t+ s+ +d+dafy+++k+s+++k+s++ql++K+++LK+Kf+ ++ ++++g+e sf++++d++if+ls
  Araha.9536s0010.1.p  50 SKMNWSKNDELVILGGIVDYENETKLSYRSDWDAFYRYIKDSVEAKFSRKQLIDKVKSLKRKFTYNQGRSNDGEELSFTNTDDDEIFKLS 139
                          7899************************************************************************************** PP

               DUF573  93 kkiWg 97 
                           +iW 
  Araha.9536s0010.1.p 140 LIIWA 144
                          ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2452143IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVGTKRLGGS IDDSLTKNRD DEVEAMFRRR KQLKTTTKTT TPLSLPSSAS KMNWSKNDEL  60
VILGGIVDYE NETKLSYRSD WDAFYRYIKD SVEAKFSRKQ LIDKVKSLKR KFTYNQGRSN  120
DGEELSFTNT DDDEIFKLSL IIWAENETEN LSNENMDQAK DFPSGEKEGS DVPCAEQERV  180
SIEIDNGEKE KLDQAKDVPC EEQENKDVPC EEQEDKDVPC EEQERVSIEI DNGEQEMSEE  240
DDLAELGDME DTLDSGISFH SLDNNGEKEK SEEDGVVELG VLQEVLKADA FFQSLGRYQQ  300
KLLLQNLENI GAEKRKELID EWKALFVEEL QLSIKKLTFT AKLANGGVSP *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9536s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5013391e-164AY501339.1 Arabidopsis thaliana hypothetical protein (At2g36340) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884570.10.0GLABROUS1 enhancer-binding protein-like 3 isoform X2
SwissprotQ9SJM40.0STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLA0A178VUJ81e-180A0A178VUJ8_ARATH; Uncharacterized protein
STRINGAT2G36340.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-166DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]