PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.9462s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 245aa MW: 26204.2 Da PI: 10.1466 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.5 | 4.9e-38 | 30 | 136 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++ Araha.9462s0010.1.p 30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStasvsirG-------TNST 112 79*************************************************************9999977732222221.......2211 PP TCP 86 ssg....................k 89 s + k Araha.9462s0010.1.p 113 SLSssldhkptsllggsspfilgK 136 111233333344555433333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.892 | 35 | 89 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.8E-34 | 35 | 152 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSINNINNNN DGVMISSNGA LIEQPSSVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGTN STSLSSSLDH 120 KPTSLLGGSS PFILGKRVRA DEDNNNHNSG GKDESFTTTP AGFWAVPARP DFGQVWSFTG 180 APQEMFLQQH HQQPLFVHQQ QQQQAAMGEA SAARVGNYLP GHLNLLASLS GGSPGSGRRE 240 EDPR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.9462s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007648 | 0.0 | AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872048.1 | 1e-150 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 1e-143 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | D7M1Q2 | 1e-149 | D7M1Q2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.6__2323__AT5G23280.1 | 1e-150 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-110 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.9462s0010.1.p |