PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.9182s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HB-other | ||||||||
Protein Properties | Length: 965aa MW: 106593 Da PI: 8.8711 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.1 | 4.8e-06 | 66 | 122 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k Araha.9182s0008.1.p 66 KRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRK 122 799*********************************************999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.572 | 63 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-5 | 65 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.27E-6 | 66 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.42E-4 | 66 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-5 | 66 | 125 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.20.930.10 | 1.9E-5 | 228 | 323 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 4.97E-6 | 231 | 324 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence Send to blast |
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV TQCKLTGVNP LAQEMAAGAL 60 SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA LFGITVAQVR EFFVTQKTRV 120 RKQVRLSREK VIMSNTHALQ EDGVLENSNA TNHVDPVPLN STHPEACSIS WGEGETVAFM 180 PPEDIPPDIS DSDKYFVENI FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI 240 LTTWLSQAAS EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RTSDISNRAK 300 GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED ILSLSNGRSE 360 NVRRFESSQG PKLLLTSADD STKKQMLGSN PSYNKERRKV QMVEQPGQKA AGKSPQTVRI 420 GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK KDPLPSAIGD SRTVVPEKPL ALQSAKDSLP 480 SQNNEARSED TPVLSAVQPV DEPLAGQAVN GTLAGQPVNG PWAVQPVNGP WAVQPVNGPS 540 GGQPVNGPSA VIVPVQADEI KKPSTPPKSI SSKVGVMMKM SSQTIFKNCK RKQIDWHVPL 600 GMELDELWRV AAGGNSKEAD VQRNRNRRER ETLYQSLQTI PLNPKEPWDR EMDYDDSLTP 660 EIPSQQPPEE SLTEPQDSLD ERRTAAGAAT TSSSLSSPEP DLELLAALLK NPDLVYALTS 720 GKPSNLAGQD MIKLLDVIKT GAPHSSSSSN KQVEERVEVS LPSPTPSTNP GMSGWGQEGI 780 RNPFSRQNQV GAAVARSGAQ LRVASMQWHQ TNEQSIPRHA PSAYSNSITL AHTEREQQQY 840 MQPKLNHNLR LQQQEPISTT SYAVREPVGQ MGTATSGLWR SQQSQNSYYS HQENEIASAS 900 QVSSYQGNNQ YMSSSNPGYE SWSPDNSPSR NHPNMRGQQQ QQQAASRKHD SSTHPYWNQN 960 KRWR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.9182s0008.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226746 | 0.0 | AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002872830.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | D7M3G5 | 0.0 | D7M3G5_ARALL; Uncharacterized protein | ||||
STRING | scaffold_604015.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.9182s0008.1.p |
Publications ? help Back to Top | |||
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