PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.9089s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 407aa    MW: 46759.8 Da    PI: 5.8717
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.9089s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.51.9e-10356402347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           WT+eE   l ++vk++G+  Wk I +  +     R++ ++k++w+++
  Araha.9089s0004.1.p 356 FWTPEEVAALREGVKEYGKS-WKDIKNSNPvvlADRSEVDLKDKWRNL 402
                          5*****************88.************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.727349406IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-11351403IPR009057Homeodomain-like
SuperFamilySSF466892.17E-12351403IPR009057Homeodomain-like
SMARTSM007174.7E-8353405IPR001005SANT/Myb domain
CDDcd116602.91E-15355402No hitNo description
PfamPF002491.6E-8357402IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEVMDKWVAE FFLRRQQNPR VYASPLLSAL QPVDSDDCPK LKVTAVLRDI SNSLIRGTVD  60
EGMLDLLEIL EKLLLEEHSV IMGSLKSAYC WTAVECTLRF MWPVTASDGF FGDALERIWR  120
TRVGTLKERE SDLVTRELLK WESDLNKAFE KPEIYQKFRE TNIRYNAISH LNQLLKEQWA  180
LLGCSSLESV AQKRFLKRKD SPYASRRRGN DFGRAGNTID NVNEELGIGE RERGNGSNRE  240
IADDVDKVNQ QEQEHEPSLN KGDMLVAREL KDFLLEIQRL IDPTTRQDQE HDNAMDQSVD  300
VTPQPDGANR TEAEDSEGTS SSRRVRPHLP TPEPLNVSPL KKGRLDRPRP RRPMKFWTPE  360
EVAALREGVK EYGKSWKDIK NSNPVVLADR SEVDLKDKWR NLFGRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.9089s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273900.0AK227390.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-05-K06.
GenBankAY5195360.0AY519536.1 Arabidopsis thaliana MYB transcription factor (At1g15720) mRNA, complete cds.
GenBankBT0030850.0BT003085.1 Arabidopsis thaliana At1g15720 gene, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF7H20.0AC034256.3 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476660.20.0PREDICTED: uncharacterized protein LOC104755883, partial
TrEMBLA0A178W6H70.0A0A178W6H7_ARATH; TRFL5
STRINGBostr.7128s0187.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.10.0TRF-like 5