PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8849s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 336aa    MW: 38432.3 Da    PI: 10.0178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8849s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.3e-106356190
                         E-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3 61 ltkGWkeFvkangLkegDfvvFkldgrsef 90
                         lt+GWkeF+ a++L+ gD+v+Fk++g++ f
  Araha.8849s0003.1.p  6 LTQGWKEFATAHNLRIGDIVIFKHQGDMVF 35
                         89*********************9998877 PP
2B373.82.1e-23102196499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++lk + + lpkk  ++  ++k++ k++ l +e+g+sW++kl+++ ++g+y++++GWk+F+++n+ kegD ++F l+g+ + +++
  Araha.8849s0003.1.p 102 ANVTASNLKFDTMNLPKKASSSKALNKRC-KEILLVNEEGNSWTLKLRFKESDGSYYIRGGWKRFCSENRQKEGDLITFNLVGDGRSTPM 190
                          56788999999*********999999877.6*****************************************************9999** PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          + ++r+
  Araha.8849s0003.1.p 191 LCICRA 196
                          ****97 PP
3B339.78.5e-13229327199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLk.egDfvvFkldgrs 88 
                          f++  +++++ k++ ++lp +f+ +++g++ ++ +++l+d++g +   +l +   + gr  l+kGWk F++an++   g+ + +kl++ +
  Araha.8849s0003.1.p 229 FVTLSLTAYNIKNSKITLPVEFT-KINGITSKHEKIILMDKHGVKRFTRLVHdGPNYGRRGLGKGWKLFCEANDVLkIGEPFKLKLTW-E 316
                          67778899**************9.6666778889*********888888877744555567************9644*********99.7 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          + ++++++++k
  Araha.8849s0003.1.p 317 NNTPLLRFCSK 327
                          77899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.039143IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-11449IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-7540No hitNo description
Gene3DG3DSA:2.40.330.104.8E-15655IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-1998190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-2099195No hitNo description
PROSITE profilePS5086315.24299197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1999189IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-24100197IPR003340B3 DNA binding domain
PfamPF023621.3E-21101196IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-15221327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14225330IPR015300DNA-binding pseudobarrel domain
CDDcd100175.12E-12228326No hitNo description
SMARTSM010193.8E-19229328IPR003340B3 DNA binding domain
PfamPF023621.6E-12229327IPR003340B3 DNA binding domain
PROSITE profilePS508638.233229327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDGRRLTQGW KEFATAHNLR IGDIVIFKHQ GDMVFSVTPF GPSCCEIQYV KCLIKKEDDN  60
VNDDEDDMEN QQNTRKGLRK ENNLKPKTET ELSLSYDYCF VANVTASNLK FDTMNLPKKA  120
SSSKALNKRC KEILLVNEEG NSWTLKLRFK ESDGSYYIRG GWKRFCSENR QKEGDLITFN  180
LVGDGRSTPM LCICRAEACS ELMGIAKGKK KTKKRRKWVA SSSSRQNRFV TLSLTAYNIK  240
NSKITLPVEF TKINGITSKH EKIILMDKHG VKRFTRLVHD GPNYGRRGLG KGWKLFCEAN  300
DVLKIGEPFK LKLTWENNTP LLRFCSKVKE EPIYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212216KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8849s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867283.10.0B3 domain-containing protein REM7
TrEMBLD7MB370.0D7MB37_ARALL; Uncharacterized protein
STRINGscaffold_701038.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.13e-57B3 family protein