PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.8689s0019.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 403aa MW: 45316.6 Da PI: 6.6364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.8689s0019.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.4e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Araha.8689s0019.2.p 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-25	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MYYQNQHQGK SILSSSRMPI HSERNPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV 120 EENPPEVDES HSESLSIGPQ PTMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEPK ELQNLRHQQM 240 QTAYPPNSSL DSCLTSSEGN QKAPKMLDNR LGLRTYIGDS TSEQKEIMEE PFFHRMELTW 300 AEEVSLRESN NRPYLSTMAN NAEPRISSSR RSPGRLSIGV GVHEHRGGSS NNSEYTEERF 360 NENGEDCKLE THTRTALDLN THDENYGTTR PKQFDLNGFS WN*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MYYQNQHQGK SILSSSRMPI HSERNPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQANSS LNKTSVMTMV  120
EENPPEVDES HSESLSIGPQ PTMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEPK ELQNLRHQQM  240
QTAYPPNSSL DSCLTSSEGN QKAPKMLDNR LGLRTYIGDS TSEQKEIMEE PFFHRMELTW  300
AEEVSLRESN NRPYLSTMAN NAEPRISSSR RSPGRLSIGV GVHEHRGGSS NNSEYTEERF  360
NENGEDCKLE THTRTALDLN THDENYGTTR PKQFDLNGFS WN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	44	101	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.8689s0019.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878825.1	0.0	myb-related protein 1 isoform X1
Refseq	XP_020878826.1	0.0	myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	D7LXT0	0.0	D7LXT0_ARALL; Uncharacterized protein
STRING	AT5G18240.1	0.0	(Arabidopsis thaliana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Link Out ? help Back to Top
Phytozome	Araha.8689s0019.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]