PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8482s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 217aa    MW: 24963.6 Da    PI: 8.4857
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8482s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3629.6e-20101196196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS... CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr... 87 
                          f+  + +s+vl+++ l++p k + ++++  ++  +++ ++ + r+W +k+++ + +g+  +++GWk+Fv++n+L+egD++vF+  ++   
  Araha.8482s0001.1.p 101 FLVFMRRSHVLSKCFLTIPYKWCVKNMLMARQ--EVV-MQVDQRKWGMKFNFFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSetr 187
                          6677899*******************888666..455.5669999*9999996666666699*********************5533112 PP

                          SEE..EEEE CS
                   B3  88 sefelvvkv 96 
                             +l+v +
  Araha.8482s0001.1.p 188 PPLHLNVYI 196
                          444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-19101201IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-22101200IPR003340B3 DNA binding domain
CDDcd100171.60E-20101198No hitNo description
Gene3DG3DSA:2.40.330.106.6E-19101198IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.338101200IPR003340B3 DNA binding domain
PfamPF023628.6E-18101188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEESCEDCMK WEEELYWTHF QTLHFTQLLL PGFHNRLLPV ISPTSTVRVS ERKYPLSSFK  60
KMRGEISNDN LDQKTDAEMI SAGSNKKALS LAKRAISPDG FLVFMRRSHV LSKCFLTIPY  120
KWCVKNMLMA RQEVVMQVDQ RKWGMKFNFF GARGSGGIST GWKKFVQDNN LREGDVCVFE  180
PANSETRPPL HLNVYIFRGE ETERSNNVDS VHTISE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8482s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4411170.0AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867189.21e-116B3 domain-containing protein REM16 isoform X3
RefseqXP_020872332.11e-115B3 domain-containing protein REM16 isoform X1
SwissprotQ8RYD11e-114REM16_ARATH; B3 domain-containing protein REM16
TrEMBLD7M8S61e-114D7M8S6_ARALL; Predicted protein
STRINGAl_scaffold_0007_7491e-115(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-117B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]