PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.8175s0022.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 793aa MW: 87851.8 Da PI: 6.5535 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.3e-24 | 172 | 273 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F Araha.8175s0022.1.p 172 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyK-QQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLASGDAVLFL- 259 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +++++el+++++r+ Araha.8175s0022.1.p 260 -RDEGGELRLGIRRA 273 .5699*******996 PP | |||||||
2 | Auxin_resp | 122.9 | 2.3e-40 | 297 | 378 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra+++eFv+++ek+++++++++s+G+Rf+m+fe++ds+err++G+v+gv dldp+rWpnSkWr+L Araha.8175s0022.1.p 297 VANAVSTKSMFHVFYSPRATHAEFVIPYEKYVTSIRNPISIGTRFRMRFEMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCL 378 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.4E-40 | 163 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.24E-42 | 166 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-20 | 170 | 272 | No hit | No description |
Pfam | PF02362 | 3.6E-22 | 172 | 273 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 172 | 274 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.267 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.8E-34 | 297 | 378 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.8E-5 | 665 | 748 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.26E-10 | 666 | 746 | No hit | No description |
PROSITE profile | PS51745 | 23.609 | 669 | 751 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 793 aa Download sequence Send to blast |
MEFDLNTEIA EVEEEENDDV GVGGTRIKKG RLGISPSSSS SCSSGSSSSS TGPASSIYSE 60 LWHACAGPLT CLPKKGNVVV YFPQGHLEQD AMVSYSSPLE IPKFDLNPQI FCRVVHVQLL 120 ANKETDEVYT QVTLLPLQEF SMLNAEGKEV KELGGDEERN GSSSVKRTPH MFCKTLTASD 180 TSTHGGFSVP RRAAEDCFAP LDYKQQRPSQ ELIAKDLHGV EWKFRHIYRG QPRRHLLTTG 240 WSIFVSQKNL ASGDAVLFLR DEGGELRLGI RRAARPRNGL PDSIIEKNSC SNILSLVANA 300 VSTKSMFHVF YSPRATHAEF VIPYEKYVTS IRNPISIGTR FRMRFEMDDS PERRCAGVVT 360 GVCDLDPYRW PNSKWRCLLV RWDESFVSDH QERVSPWEID PSVSLPHLSI QSSPRPKRPW 420 AGLLDTTPPG NPITAERGGF LDFEESVRSS KVLQGQENLG SASPSQGFDV MNRQILDFAM 480 QSHASPVLLS SRVKDRFGEF VNATALNPAC SGVMDLDRFP RVLQGQEICS LKSFPQFAGF 540 SPAAASGKPN LGYTDPFAYQ ANKSSFYPLA LHGIRSTHVP YHNPYNAGNQ SSGRPSRAIN 600 VGEETRKFDA QKEGGLPNNV TADLPFKIDM MGKQKGSDFN MNASSGCKLF GFSLPVETPA 660 SNPQSSSKRI CTKVHKQGSQ VGRAIDLSRL NGYDDLLTEL ERLFNMEGLL RDPEKGWRIL 720 YTDSENDMMV VGDDPWHDFC NVVWKIHLYT KEEVENANDD NKSCLEQAAI MMEASKSSSV 780 SQPDSSPTIT RV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldw_A | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldw_B | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldx_A | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldx_B | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldy_A | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
4ldy_B | 1e-112 | 45 | 401 | 2 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.8175s0022.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY080832 | 0.0 | AY080832.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. | |||
GenBank | AY113977 | 0.0 | AY113977.1 Arabidopsis thaliana auxin response factor ARF4 (At5g60450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889184.1 | 0.0 | auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | D7MTU6 | 0.0 | D7MTU6_ARALL; Auxin response factor | ||||
STRING | fgenesh2_kg.8__2008__AT5G60450.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9530 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.8175s0022.1.p |