PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8092s0008.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 349aa    MW: 39028 Da    PI: 9.1426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8092s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.1e-06229261840
                          HHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS
                  HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsK 40 
                          +Er RR+ri + +  L +llP+++ ++++ l+ 
  Araha.8092s0008.1.p 229 NERERRQRIDDNIKALGKLLPHQVEEDNPELTL 261
                          7*********************97666666653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.8.103.4E-4436No hitNo description
SuperFamilySSF474591.31E-6219281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-6228281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGFRSVYQSL TELFPQIDPK ILRGVAIEHQ HDADEAASLV ISEIFPFSSP NSTQLRSKNK  60
TKISGNPHSL KVEADDGSLS LSQWLQPSKL PHSYLALLNE ESTADVKPPP DYVVEKVVLP  120
SRGSAAGVGG GIRTMYSSDT IGGSILVKPS IRVQSRTNNE LSGSSSKVLV GRRSSRKSEQ  180
PWSPDYSQKL RSWKKRNNNN NRDFSQHFGN YRDVPSKKSN KNKYRCYTNE RERRQRIDDN  240
IKALGKLLPH QVEEDNPELT LNAIVDHVKL LQLQMKELSR SRLGGELISH PMTFIEGYGH  300
YIHHEQTVTK SLEEVMEDML TNDLDAAANL LESKGLYLMP LSSVQGSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8092s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0292040.0BT029204.1 Arabidopsis thaliana At5g64980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884816.10.0uncharacterized protein LOC9302716 isoform X1
RefseqXP_020884822.10.0uncharacterized protein LOC9302716 isoform X1
TrEMBLD7MSL90.0D7MSL9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.8__2534__AT5G64980.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-11LJRHL1-like 2