PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8060s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 615aa    MW: 68552.7 Da    PI: 5.8419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8060s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10508555347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          +WT  E e+lv++v ++G g W+ I r      ++Rt  ++k++w+++
  Araha.8060s0006.1.p 508 AWTVSEVEKLVEGVSKYGVGKWSEIKRLSFspyTHRTSVDLKDKWRNL 555
                          7**************************99899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.345501560IPR017930Myb domain
SuperFamilySSF466898.97E-16503557IPR009057Homeodomain-like
SMARTSM007171.0E-9505558IPR001005SANT/Myb domain
CDDcd116607.87E-22507557No hitNo description
Gene3DG3DSA:1.10.10.603.2E-12507557IPR009057Homeodomain-like
PfamPF002498.2E-7508555IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MFGNVEHYGE MFQDSIFQTR SGSLSSTNQI GNRVAYKLVR VAGDGSLVPA TDEEMLKVKD  60
LLENNEHVNE HDMPVLPEPI QTEEYTPDKG SPSQFLQLEN FEGLFQSETA EAYTENLNSR  120
HESKEELMYG TQMLFALPDT KFQISNELPG NVEQVQSEVL LPEPILFSSN GCSMNQSTDD  180
LNATCSPKEP KEAALSTAAS KSEVSRVAGE ICLDNLSIRA LQETSRATFG RETTCKDKRW  240
LKRRITMGLI NSCVVPTTNL TINDNKLIGG DQDAIDAFSK DTLDEERAIE SKDTPSSPDC  300
MKGYLDDFGH TPVETFVDYY SGNEDFEGEH RSAKRVRKPT RRYIVETSET GERQQSDESM  360
IPSKDQSSIQ AVSSGGGVVV TRMVSLAGSR IQVPYVSHVR RSRPRENIMA LGEFHSKSWE  420
VKATPDKGNL NLSPSQLNND VNRVPGVKSA PRRVQKESDK DHLKPIFTDV DQDMMEPELL  480
ESSGDSSDDN CVDVPITQSA IRRKLHRAWT VSEVEKLVEG VSKYGVGKWS EIKRLSFSPY  540
THRTSVDLKD KWRNLQKASS SNRMGGGLKK HGSMAIPSHI MLQVRELAQK QSPISSVESK  600
ARVVKRSRSR NGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1604609KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8060s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0806650.0AY080665.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY1229660.0AY122966.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY5195370.0AY519537.1 Arabidopsis thaliana MYB transcription factor (At1g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867515.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867516.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867517.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867518.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867519.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867520.10.0uncharacterized protein LOC9326289 isoform X1
TrEMBLD7KFF70.0D7KFF7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1907__AT1G17460.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3