PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.7846s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 289aa MW: 33130.1 Da PI: 10.6051 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.7 | 6e-20 | 19 | 113 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 ffkvl + d +++++ lp +f+++++++ e s +++++ ++g sWev++ +k+++ ++ ++GW +Fv++n L +++f++F+++g+++ Araha.7846s0004.1.p 19 FFKVLQRVDFSSENMRALPYDFVRSFSNN-ELSGKMKIKARWGSSWEVEI--CKNPRFyFMEKSGWVKFVRDNALGDNEFLTFTHKGKMR 105 99***********************9877.5777****************..******555569********************999999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v +f++ Araha.7846s0004.1.p 106 F--TVNIFKQ 113 9..9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-19 | 13 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-20 | 15 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.48E-20 | 18 | 112 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.4E-23 | 19 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-19 | 19 | 113 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-17 | 191 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-13 | 191 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.404 | 195 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-10 | 198 | 286 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MARNSDYDLC KEERKRESFF KVLQRVDFSS ENMRALPYDF VRSFSNNELS GKMKIKARWG 60 SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGKMRFTVNI FKQDGKEMLQ 120 PPQSMASMSS SRRTKTEQGI SCLATTITAE SNGGGNYKRK LNFGKKKAAE SQNSKRTEKD 180 FSVRKDSAGA SSSSVAEFTT FIKKSYLIFM RIPKSVQSIH MPMQRTIFKI HHPNMKKSWN 240 VVYLVADRGA SFSGGWKRLA QEYPVAVGDT CKFSFIKQHE LILSVLKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.7846s0004.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT020353 | 0.0 | BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020882942.1 | 0.0 | B3 domain-containing protein At2g35310 isoform X1 | ||||
Swissprot | Q5PNU4 | 1e-172 | Y2531_ARATH; B3 domain-containing protein At2g35310 | ||||
TrEMBL | D7LHU8 | 0.0 | D7LHU8_ARALL; Transcriptional factor B3 family protein | ||||
STRING | fgenesh2_kg.4__1555__AT2G35310.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35310.1 | 1e-165 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.7846s0004.1.p |
Publications ? help Back to Top | |||
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