PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7652s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 336aa    MW: 37742.7 Da    PI: 10.0938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7652s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-091256345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +W +++d  + +a + +  +   +Wk+Ia  ++ g+tl+q++++++
  Araha.7652s0004.1.p 12 SWNKDDDIAFERALAIYNDKteiRWKKIATVVP-GKTLEQVIEHYN 56
                         7*****************99*************.***********7 PP
2Myb_DNA-binding36.51.1e-11120164347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT  E+ +++ + k++G+g+W++I+r+   +Rt  q+ s+ qky
  Araha.7652s0004.1.p 120 PWTSIEHRQFLLGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKY 164
                          7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.094863IPR017884SANT domain
SMARTSM007172.4E-8961IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.600.0011256IPR009057Homeodomain-like
PfamPF002495.7E-71256IPR001005SANT/Myb domain
CDDcd001671.13E-81256No hitNo description
SuperFamilySSF466891.05E-101263IPR009057Homeodomain-like
PROSITE profilePS5129413.406112169IPR017930Myb domain
SuperFamilySSF466897.48E-15114169IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-15117167IPR006447Myb domain, plants
SMARTSM007171.3E-6117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-9118164IPR009057Homeodomain-like
PfamPF002496.4E-9120164IPR001005SANT/Myb domain
CDDcd001675.03E-9120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MALGQKISVG SSWNKDDDIA FERALAIYND KTEIRWKKIA TVVPGKTLEQ VIEHYNILAR  60
DVMLIESGCI PLPDYDFSEE PNHDASDKER SILEGGNNRK CEFKHKGKSK LKQKRRKGIP  120
WTSIEHRQFL LGLKKYGKGD WRSISRHCVV TRTSTQVASH AQKYFAHINS KDKKRKRPSI  180
HDITVAEKQC ISTKQRPITW QNRNINGATT SNTHANQTTL QPSLNLPIYD RPNIWNTQAT  240
QAISQPSLNH PTYGASTTWN TQAALQPSAN IHMYGTSTIS QPMVGPILSP FGTNLNRLAP  300
PHMTSGVQHN SVPYYSDPSA PINMGSIPYN IDLYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-131075873RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7652s0004.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566850.0DQ056685.1 Arabidopsis thaliana myb family transcription factor (At5g23650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872065.10.0transcription factor SRM1
TrEMBLD7M2B80.0D7M2B8_ARALL; Predicted protein
STRINGAl_scaffold_0006_22420.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.10.0Homeodomain-like transcriptional regulator