PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7513s0019.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 704aa    MW: 78716.5 Da    PI: 6.055
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7513s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-192680256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         r+ +++t++q+++Le++F+++++p++++r++L ++l+L+ +q+k+WFqN+R++ k
  Araha.7513s0019.1.p 26 RTCHRHTPQQIQRLEAYFKECPHPDETQRKQLCQELKLEADQIKFWFQNKRTQSK 80
                         555689**********************************************998 PP
2START122.36.2e-392184392206
                          HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS
                START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla 77 
                          +a +a +el ++ l ee++Wvks    +  + +e++ k     +            ++e +++++vv+ ++ +lve +ld+  +W+e ++
  Araha.7513s0019.1.p 218 IAASAVEELKRLFLTEEQFWVKSCidgTYVIDTESYEK-----FshavkhfssttAHVESSKDVTVVPIEAINLVEMFLDSE-KWKELFP 301
                          78899999****************66644444444444.....3333567888889**************************.******9 PP

                          ....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                START  78 ....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                              ka+t+ v+ sg       ++lq++  +l  lsplvp R+f++vR++++ ++g w+i+dvS  ++ +  +    + + ++pSg+li+
  Araha.7513s0019.1.p 302 tivnKAKTIHVLGSGlpirencNVLQVIWEQLHILSPLVPaREFMIVRCCQEIEKGLWIIADVSHRVKFDFVN----AACYKRPSGCLIQ 387
                          9999**********************************************************99999888775....566779******* PP

                          EECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 156 pksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                           ++n hskv w+ehv+++ +l  h ++r lv+ g   gak+w  tl+r ce+
  Araha.7513s0019.1.p 388 ALPNAHSKVMWIEHVEVDHKLDtHKIYRDLVSGGSGYGAKRWIVTLERMCER 439
                          *********************99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-19480IPR009057Homeodomain-like
SuperFamilySSF466895.13E-18882IPR009057Homeodomain-like
SMARTSM003893.4E-152286IPR001356Homeobox domain
PROSITE profilePS5007116.0342282IPR001356Homeobox domain
CDDcd000865.35E-162582No hitNo description
PfamPF000467.2E-172780IPR001356Homeobox domain
PROSITE profilePS5084840.04208442IPR002913START domain
SuperFamilySSF559612.61E-25213440No hitNo description
CDDcd088753.88E-96213438No hitNo description
SMARTSM002342.3E-23217439IPR002913START domain
PfamPF018521.3E-32218439IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-4221408IPR023393START-like domain
SuperFamilySSF559617.69E-9458668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDNDGGGSSS GNEQYTSGDA KQNGKRTCHR HTPQQIQRLE AYFKECPHPD ETQRKQLCQE  60
LKLEADQIKF WFQNKRTQSK TQDERSTNVL LRGENEALQS ENEAMLDALR NVICPACGGP  120
PFGREGREHN LQILRFENAR LKENRDRLSN FVNNHMPNEP TVGDSLAYVP SHQIFNGISY  180
GINGSNIYEP SSSYGPPTSQ IIQPRPLSET DISLLSEIAA SAVEELKRLF LTEEQFWVKS  240
CIDGTYVIDT ESYEKFSHAV KHFSSTTAHV ESSKDVTVVP IEAINLVEMF LDSEKWKELF  300
PTIVNKAKTI HVLGSGLPIR ENCNVLQVIW EQLHILSPLV PAREFMIVRC CQEIEKGLWI  360
IADVSHRVKF DFVNAACYKR PSGCLIQALP NAHSKVMWIE HVEVDHKLDT HKIYRDLVSG  420
GSGYGAKRWI VTLERMCERM ALSSIRTLPP NDWSEVISTG EARRSVMKLG ERMLKNFNEM  480
LTMSGKVDFP QQSKNGVRVS IRMNNEAGQP PGIVVSASSS LSIPLTPLQV FVFLQNLDTR  540
QQWDILSYGT VVNEIARIAT GSSETNCLTI LRVHPMQEEN NDKLVAQDSS KDDMLMLQDC  600
YMDALGGMIV YAPMDMATMD FAVSGEVDPS HIPILPSGFI ISSDGRRSTV EDGGTLLTVA  660
FQILVSGKTT RSREVNEKSV DTVSGLISST VQRIKGLLNC PQC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7513s0019.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1178670.0AK117867.1 Arabidopsis thaliana At3g03260 mRNA for unknown protein, complete cds, clone: RAFL19-04-D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020886110.10.0homeobox-leucine zipper protein HDG8 isoform X1
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A178VGS80.0A0A178VGS8_ARATH; HDG8
STRINGAT3G03260.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8