PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7399s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 283aa    MW: 33059.6 Da    PI: 8.4659
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7399s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.16.4e-203642686
             trihelix 26 lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
                         +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +k+ +++++++  ++++++
  Araha.7399s0004.1.p  3 QKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILGKGiACRVVENQGLLESMD 64
                         89********************************************89*******9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-15390No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK FNDLNKRYKR VNDILGKGIA CRVVENQGLL  60
ESMDHLTAKL KDEVKKLLNS KHLFFREMCA YHNSCGHLGG HDQPPQQNPI SIPSQQNCFH  120
AAEAGKMARI AERVEVEEEV ESDMAGDSES EMEESEEEVE EETRKKQRIS TAVKRLREEA  180
TRVVEDVGKS VWEKKEWMRR KMLEIEEKKI GYEWEAVEME KQRVKWMRYR SKKEREMEKA  240
KLDNQRRRLE TERMVLNLRR SEIELNELQS SGKRVDPSSA KG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7399s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0109270.0AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankAY0910280.0AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888966.11e-174uncharacterized protein LOC9320839
TrEMBLD7L8U91e-173D7L8U9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__1033__AT3G10040.11e-174(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-156sequence-specific DNA binding transcription factors