PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7254s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 337aa    MW: 39336.4 Da    PI: 10.5889
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7254s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.8e-1621114198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d +++++  ++ +f+++ +  k  s +++++ ++g++W +++  +k+++ y+++ +GW +Fv++n L e++f++F++ g++ 
  Araha.7254s0007.1.p  21 FFKIFQSADLSSESMRAFSYSFITRVSR-KDFSYKMVIRAQWGKTWHLEI--SKNPRYYYIErRGWDQFVSDNALGENEFITFTHRGNMV 107
                          89***99999999*99*******99954.46999****************..9***99665549********************999999 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +v +++
  Araha.7254s0007.1.p 108 F--HVNIYE 114
                          9..888876 PP
2B332.51.5e-102443201394
                          TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          ++ l +pk+f+++h   +++sk  t+++++g  sW+v +    +  r+++++G ++ +++  L +gD ++Fkl++   fe+v+
  Araha.7254s0007.1.p 244 LKFLAIPKHFVDDHI--PNKSKFFTVRHPNGiGSWKVLC--LVREIRTIFSGGYSKLAREYPLMVGDKCTFKLIK--PFEFVL 320
                          35699******9995..446778999*****9*******..8888899************************987..555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-1816121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-1618117IPR015300DNA-binding pseudobarrel domain
CDDcd100176.60E-1620113No hitNo description
PROSITE profilePS5086312.77421116IPR003340B3 DNA binding domain
PfamPF023624.9E-1521114IPR003340B3 DNA binding domain
SMARTSM010191.8E-1921116IPR003340B3 DNA binding domain
PROSITE profilePS508638.825232326IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-16232323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-14233321IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-12233314No hitNo description
SMARTSM010192.4E-15235326IPR003340B3 DNA binding domain
PfamPF023622.0E-8243318IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRRRNIGFD KIIEERKMLS FFKIFQSADL SSESMRAFSY SFITRVSRKD FSYKMVIRAQ  60
WGKTWHLEIS KNPRYYYIER RGWDQFVSDN ALGENEFITF THRGNMVFHV NIYEQNGVEM  120
LTPRKFQTMD SSSGIKKEGE SSAKDVKKEE ETDEYAGRAE FVVRKRKTEE SKSSKKKMER  180
KKVKNGVETG ESSRGSELKA RKKKAEGYNT SKKKKKSKSK SKSKSKEVLN GVPEFKITIR  240
KSYLKFLAIP KHFVDDHIPN KSKFFTVRHP NGIGSWKVLC LVREIRTIFS GGYSKLAREY  300
PLMVGDKCTF KLIKPFEFVL LTSKKTRDEI DHYMID*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201215KKKAEGYNTSKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7254s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936180.0AB493618.1 Arabidopsis thaliana At3g17010 mRNA for hypothetical protein, partial cds, clone: RAAt3g17010.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889192.10.0B3 domain-containing protein At3g17010 isoform X1
SwissprotQ9LSP61e-170Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLD7L6A00.0D7L6A0_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh1_pm.C_scaffold_30014810.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-152B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]