PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.71743s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 20053.1 Da PI: 4.246 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 1 | 22 | 24 | 46 |
HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46 W++Ia+++ gRt++++k++w++ Araha.71743s0001.1.p 1 WSKIASHFS-GRTDNEIKNHWNT 22 *********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-11 | 1 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-5 | 1 | 22 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-5 | 1 | 22 | No hit | No description |
PROSITE profile | PS51294 | 16.363 | 1 | 28 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-7 | 1 | 33 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
WSKIASHFSG RTDNEIKNHW NTKIKKKMKH LGLDPATHKP MNDITHQTDP NQDTKPNMCS 60 TISEGEEIKD QTPKDDVITE TTKTLILSDN DEELLVKNNK TLCVEEVDLE YLFETQGNEI 120 SSSSFSSLYS NISRSESSSY LAEDSISLEQ WDLDMTDPFV PWDLFANLDD NLFFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.71743s0001.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163817 | 0.0 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | AY519622 | 0.0 | AY519622.1 Arabidopsis thaliana MYB transcription factor (At5g14340) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001330910.1 | 1e-101 | myb domain protein 40 | ||||
Refseq | NP_196938.2 | 1e-100 | myb domain protein 40 | ||||
TrEMBL | A0A1P8BC92 | 1e-99 | A0A1P8BC92_ARATH; Myb domain protein 40 | ||||
TrEMBL | F4K6R6 | 7e-99 | F4K6R6_ARATH; Myb domain protein 40 | ||||
STRING | AT5G14340.1 | 2e-99 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-91 | myb domain protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Araha.71743s0001.1.p |