PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7145s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 312aa    MW: 34716.9 Da    PI: 5.9527
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7145s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.32.9e-07163221563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          k+  r+  NR AA r+ ++    i  Le++vk Le+  ++L+ +   l+ke   + se+
  Araha.7145s0003.1.p 163 KKIQRRLANRAAAARFKEKQTNHILDLERRVKILEKTHDSLIGTKTLLEKENMMMMSEN 221
                          8899*********************************************9998887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-12159223IPR004827Basic-leucine zipper domain
PfamPF077161.0E-5161212IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.875161213IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-8163218No hitNo description
Gene3DG3DSA:1.20.5.1707.1E-9163218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAPQSSPGSS YPELSGMFVG DSSCGEEGFG ELIYDDEAMK EFYSEFMILH NNNNGDHQNQ  60
NQNVDVLMIT NTDSGGASNA IESGYKTGST TSGVKRRAGK EIEPSCQLYR SASGDKCYSD  120
LIKRRNLQGQ VSNCVGSGDK YNATELKMIS SCHRLTEGAD DPKKIQRRLA NRAAAARFKE  180
KQTNHILDLE RRVKILEKTH DSLIGTKTLL EKENMMMMSE NREGKLRVQL LEQRAHLLDE  240
IERLEKEAKE REGGDYSQLK LSKELIAEVN RLKVATGEGM ANPNQFDGST MQQLDPNMFQ  300
QQPGPAHDTI K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161167PKKIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7145s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880367.11e-145uncharacterized protein LOC9316434
RefseqXP_020884099.11e-145uncharacterized protein LOC9316434
TrEMBLD7LL161e-144D7LL16_ARALL; Uncharacterized protein
STRINGscaffold_400037.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2100622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G12940.11e-24bZIP family protein