PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7109s0021.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 324aa    MW: 37478.2 Da    PI: 10.165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7109s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-143079148
                         TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W + Ed+ll ++vk++  +   +W++Ia+ ++ gR +kqc++rw+++l
  Araha.7109s0021.1.p 30 KGAWRKYEDDLLSELVKEYMENdkpQWSKIAKQLP-GRIGKQCRERWHNHL 79
                         799*****************99*************.*************97 PP
2Myb_DNA-binding543.8e-1785127145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +WT eE+++lv+a +++G++ W+ Ia+ +  gRt++++k++w+
  Araha.7109s0021.1.p  85 KSPWTREEELILVQAQREHGNK-WAEIAKLLS-GRTENNIKNHWN 127
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-9941IPR009057Homeodomain-like
SuperFamilySSF466892.12E-15971IPR009057Homeodomain-like
PROSITE profilePS5129425.622583IPR017930Myb domain
SMARTSM007171.1E-142981IPR001005SANT/Myb domain
CDDcd001674.59E-103279No hitNo description
PfamPF139213.9E-153393No hitNo description
Gene3DG3DSA:1.10.10.607.5E-244286IPR009057Homeodomain-like
SuperFamilySSF466896.41E-2959137IPR009057Homeodomain-like
PROSITE profilePS5129420.62684134IPR017930Myb domain
SMARTSM007173.8E-1584132IPR001005SANT/Myb domain
CDDcd001671.32E-1087127No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2187135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
ECLSGRKEKR RNGVQCQHRW LKVLHPDLNK GAWRKYEDDL LSELVKEYME NDKPQWSKIA  60
KQLPGRIGKQ CRERWHNHLN PTIKKSPWTR EEELILVQAQ REHGNKWAEI AKLLSGRTEN  120
NIKNHWNCSV KKRLKQFPSN LFSGVINSCR HEYNFFNQSN TMAESCITFQ IKEAEKSPQR  180
DSLDLTLGPM NWRNTPSSTS SLRGEESVSS SVESDWSRLN VSESVETPQS SNNDNVCVKE  240
VKEMKERLRM AASTFNTPSI ISKRSSPASG LKRLRQKDDR PFQIDARSHM SSEEKQSISS  300
KNRRNTCSSG SKPLERRLDF DFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-4791346128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7109s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878065.10.0transcription factor MYB3R-2 isoform X1
SwissprotQ9SPN31e-169MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLD7M5M80.0D7M5M8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.6__3646__AT4G00540.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-170myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]