PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6997s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 311aa    MW: 34550.3 Da    PI: 9.8723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6997s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.5e-1464108147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT +E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Araha.6997s0009.1.p  64 RENWTDQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 108
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1758114IPR009057Homeodomain-like
PROSITE profilePS5129415.20659113IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-761114IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1762111IPR006447Myb domain, plants
SMARTSM007173.3E-1163111IPR001005SANT/Myb domain
PfamPF002496.9E-1264108IPR001005SANT/Myb domain
CDDcd001679.53E-966109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVSVNPRPKG FPIFDPVNMS LPGSDGFGSN PIATIPATGR TSTVSFSDDP TTKIRKPYTI  60
KKSRENWTDQ EHDKFLEALH LFDRDWKKIE AFVGSKTVVQ IRSHAQKYFL KVQKSGANEH  120
LPPPRPKRKA SHPYPIKAPK NVAFTSHVLP SSSTLPLLEP GYLYSSDSQP LLGNQAVCAS  180
SSSSWNHEST NLPKPVIEVE EPGVSATAPL PKNRCSKEDT RRVRAVTKPN DEESCEKPHR  240
VMPNFAEVYS FIGSVFDPNT SGHLQRLKQM DPINMETVLL LMQNLSVNLT SPEFAEQRRL  300
ISSYSAKALK *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6997s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195130.0AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874991.10.0protein REVEILLE 5 isoform X2
SwissprotC0SVG50.0RVE5_ARATH; Protein REVEILLE 5
TrEMBLD7M4X20.0D7M4X2_ARALL; Predicted protein
STRINGAl_scaffold_0006_38860.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.20.0MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]