PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.69440s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 309aa    MW: 35771.1 Da    PI: 10.1046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.69440s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.7e-2119112198
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+l ++d +++ + ++p + +++++  k +s++++l+ ++g sW+vk+  +k++   y+  +GW++Fv++ngL e++f++F+++ ++
  Araha.69440s0001.1.p  19 FFKILRREDFSSEMMRMIPHHLIRSISD-KSSSFKMVLRVPWGSSWQVKI--SKNPIFhYMEDRGWNQFVNDNGLGENEFLTFTHEANM 104
                           99************************64.5799*****************..9***9966777**********************999* PP

                           EE..EEEEE- CS
                    B3  89 efelvvkvfr 98 
                           +f  +v++f+
  Araha.69440s0001.1.p 105 CF--NVTIFE 112
                           **..999987 PP
2B346.47e-152293061597
                           -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            l +pkkf++ h+ +  e+k+ ++ +++g +sWev +    ++ +  +++GW++ +k+ gL +gD+++F+l++   +e++vkv 
  Araha.69440s0001.1.p 229 FLGIPKKFVDMHMPS--ETKMFKIHHPRGkKSWEVWY--VVNDVQSRFSGGWSRLAKELGLVVGDVCTFELIK--PTEMCVKVS 306
                           368*******99855..66799999*99989******..556666669**********************987..666788876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2113115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-2114118IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-1917111No hitNo description
SMARTSM010192.0E-2519114IPR003340B3 DNA binding domain
PfamPF023624.6E-1919113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.16919114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18215306IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-20215305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.758215308IPR003340B3 DNA binding domain
CDDcd100173.23E-16216307No hitNo description
SMARTSM010192.9E-18218308IPR003340B3 DNA binding domain
PfamPF023621.5E-11229305IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRNRVFGQV MEERDNPAFF KILRREDFSS EMMRMIPHHL IRSISDKSSS FKMVLRVPWG  60
SSWQVKISKN PIFHYMEDRG WNQFVNDNGL GENEFLTFTH EANMCFNVTI FEADGTEMLR  120
PRQPSTIASS SGRNKREERK SIYKDVKKEE EIESWSESSY VGHKTAESTS GRLKQKQELN  180
LRKKEADKTE KSKKSKKKKV DTVCNDSEAG TSSLVPEFKL TIKKSHLLFL GIPKKFVDMH  240
MPSETKMFKI HHPRGKKSWE VWYVVNDVQS RFSGGWSRLA KELGLVVGDV CTFELIKPTE  300
MCVKVSKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171183RLKQKQELNLRKK
2181198RKKEADKTEKSKKSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.69440s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2270350.0AK227035.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-55-P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873865.10.0B3 domain-containing protein At5g18000
SwissprotQ9FJG20.0Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLD7LXQ00.0D7LXQ0_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_60014990.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-180VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]