PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6832s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 234aa MW: 26135.5 Da PI: 5.7481 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 31 | 75 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e +++++++lG++ W++Ia+ m+ Rt++++k++w++ Araha.6832s0005.1.p 31 RGKFTPQEEEEIIKYHALLGNR-WAAIAKQMP-SRTDNDIKNHWNSC 75 89********************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.202 | 1 | 25 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-13 | 1 | 37 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.92E-22 | 11 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.943 | 26 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-17 | 30 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-17 | 31 | 75 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.51E-12 | 33 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-22 | 38 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
WGSLPKKAGL QRCGKSCRLR WLNYLRPGIK RGKFTPQEEE EIIKYHALLG NRWAAIAKQM 60 PSRTDNDIKN HWNSCLKKRL AKKGIDPMTH EPTTTSLTVD VTSSSTTSSP TPSPTSSSVS 120 SSSSTGSARF LNKLAAGISS RKHGLESIKT VILSEQPREA VDEGKMMINM KEEELISCFM 180 EIDETLSIDE LPCDDSTSGF VAFDDYSLTD PYRYSVYESD FYDETEQLDL FLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-21 | 12 | 80 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6832s0005.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF217205 | 0.0 | AF217205.2 Arabidopsis thaliana putative transcription factor (MYB95) mRNA, complete cds. | |||
GenBank | AK118381 | 0.0 | AK118381.1 Arabidopsis thaliana At1g74430 mRNA for putative transcription factor (MYB95), complete cds, clone: RAFL19-64-J20. | |||
GenBank | AY519570 | 0.0 | AY519570.1 Arabidopsis thaliana MYB transcription factor (At1g74430) mRNA, complete cds. | |||
GenBank | BT005272 | 0.0 | BT005272.1 Arabidopsis thaliana At1g74430 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887540.2 | 1e-144 | transcription factor MYB122 | ||||
Swissprot | O64399 | 3e-45 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | Q9SG63 | 1e-139 | Q9SG63_ARATH; At1g74430 | ||||
STRING | AT1G74430.1 | 1e-139 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 1e-131 | myb domain protein 95 |
Link Out ? help Back to Top | |
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Phytozome | Araha.6832s0005.1.p |