PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.67016s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79660.1 Da    PI: 6.0764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.67016s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.2e-1768123156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++  ++++ q++eLe++F+++++p+ ++r  L+ +l L+  q+k+WFqN+R++ k
  Araha.67016s0001.1.p  68 KKRYNRHSQIQIQELEAFFRECPHPDDNQRNALSVQLALDPVQIKFWFQNKRTQSK 123
                           56778899*********************************************998 PP
2START164.67e-522554752206
                           HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                 START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                           la  a++el+ +a+++ep+W+  +      +n de++++f ++ +     +++ea+r++g+v m++   ve l++ +  W++++     
  Araha.67016s0001.1.p 255 LAVGAMEELLVMAQVAEPLWMGGVdgtsLALNLDEYTRTFRKGLGprlngFRTEASRETGLVAMCPIGIVEMLMQEN-LWSTMFVgivg 342
                           78899****************9998877789*********88766********************************.*********** PP

                           EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                 START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           +a+t+e i  +      g lq m+ae+q+lsplv+ Rd +fvRy++q+g+g w++vdvS+d+  ++       +++++pSg+li++   
  Araha.67016s0001.1.p 343 RAKTHEEILADaagnfnGNLQIMSAEYQVLSPLVStRDCYFVRYCKQQGEGLWAVVDVSIDHLLPNLH----LKCRRRPSGCLIQEIHS 427
                           *****************************************************************974....99999************ PP

                           CEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 160 ghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                           g+skvtwvehv+++++   h+++++l+ +g+a++a++wva+l rqce+
  Araha.67016s0001.1.p 428 GYSKVTWVEHVEVDDSAGgHNIFKHLICTGQAFAANRWVAALARQCER 475
                           ****************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1751126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-1951127IPR009057Homeodomain-like
PROSITE profilePS5007115.48365125IPR001356Homeobox domain
SMARTSM003893.9E-1666129IPR001356Homeobox domain
CDDcd000861.86E-1567126No hitNo description
PfamPF000467.7E-1568123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PROSITE profilePS5084834.503245478IPR002913START domain
SuperFamilySSF559614.46E-29249477No hitNo description
CDDcd088754.42E-114249474No hitNo description
SMARTSM002342.0E-45254475IPR002913START domain
PfamPF018528.3E-44255475IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-5357440IPR023393START-like domain
SuperFamilySSF559618.25E-15497690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048825Biological Processcotyledon development
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MSQSNMVPVV SNGDGDNNEN NNVNNNSGGT DNTNAGNNSG DQEFESGNTS SGNHGEGLEN  60
NQAPPPKKKR YNRHSQIQIQ ELEAFFRECP HPDDNQRNAL SVQLALDPVQ IKFWFQNKRT  120
QSKNQQERFE NSELRTANNQ LKAENQRLLK AIRQASCPKC GGKTAIGEMS FEEHHLRILN  180
ARLNEEIKQI SATAETIERL TGKPVMSHPG MSPPIPPPTF EFGMGSNGRD VFGNVGNHSR  240
ETTGPADKKP IIMELAVGAM EELLVMAQVA EPLWMGGVDG TSLALNLDEY TRTFRKGLGP  300
RLNGFRTEAS RETGLVAMCP IGIVEMLMQE NLWSTMFVGI VGRAKTHEEI LADAAGNFNG  360
NLQIMSAEYQ VLSPLVSTRD CYFVRYCKQQ GEGLWAVVDV SIDHLLPNLH LKCRRRPSGC  420
LIQEIHSGYS KVTWVEHVEV DDSAGGHNIF KHLICTGQAF AANRWVAALA RQCERISSIL  480
TTDFQSVDSG DHITLTDHGK MSMVKIAERV ARSFFNGLTS SMGSTFSGVA GEDIRVMTMK  540
SVNDPGKPPG IILCAATSFW VPVPPKTVFD FLRDETNRAQ WDVLCNGEMM QKIAEVTNGR  600
DNRNCASLLR KVNTCQTKMM IVQETSTDPT ASFVLYAPVD MTSMEISLHG GGDPDFVALL  660
PFGFAIFPDG TGQPGGNEGG SLLTVSFQML VESGPSGQLS ISSVATVENL IRTTVLRIKA  720
LFPCQTA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.67016s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF9886350.0EF988635.1 Arabidopsis thaliana homeodomain-leucine zipper protein (HDG3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885307.10.0homeobox-leucine zipper protein HDG3 isoform X1
RefseqXP_020885308.10.0homeobox-leucine zipper protein HDG3 isoform X1
SwissprotQ9ZV650.0HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBLA0A178VYN20.0A0A178VYN2_ARATH; HDG3
STRINGAT2G32370.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32370.10.0homeodomain GLABROUS 3
Publications ? help Back to Top
  1. Burkart-Waco D,Ngo K,Lieberman M,Comai L
    Perturbation of parentally biased gene expression during interspecific hybridization.
    PLoS ONE, 2015. 10(2): p. e0117293
    [PMID:25719202]