PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.65170s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 278aa MW: 31732 Da PI: 7.4325

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.65170s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.1	2.6e-26	124	174	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s e++s yF++pi++AA+eL+++lT+LK++CR++GIkRWPhRk+ sl Araha.65170s0004.1.p 124 SKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSL 174 5899********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.258	105	194	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-21	126	174	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKSFCKLEYH QVFGNEDISF SFLNHSSLYS HQSELANPFF ELEDEILPSA TSSNYFTSAS 60 SFLALPDLEP ISIVSHEDIL SVYGSASWTE EESMLDSDFA KKSETTTTKK KRCREECVSS 120 CYVSKTLSKE TISLYFYMPI TQAARELNIG LTLLKKRCRE LGIKRWPHRK LMSLQKLISN 180 VKELEKMEEE ENEDKLRNAL EKLQKEKKTI EKLPDLKFED KTKRLRQACF KANHKRKRSS 240 GMSTPITSSS SSPSSSFYSS LSGLSDNRCS MVVDEEV*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.65170s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC011809	1e-158	AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence.
GenBank	CP002684	1e-158	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870007.1	1e-171	protein RKD1
Swissprot	Q9M9U9	1e-158	RKD1_ARATH; Protein RKD1
TrEMBL	D7KH70	1e-162	D7KH70_ARALL; RWP-RK domain-containing protein (Fragment)
STRING	fgenesh2_kg.1__2057__AT1G18790.1	1e-163	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-140	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Araha.65170s0004.1.p