PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6463s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 345aa    MW: 38467.5 Da    PI: 9.6392
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6463s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind408.48.9e-12513441301
            GAGA_bind   1 mdddgsre..rnkgyyepaaslken.lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                          mdd g+re  r+k+  + +  ++++   +q+ms+iaerda+i+ernla+sekkaavaerdmaflqrd+a+aern+a++erd++l+al+++
  Araha.6463s0004.1.p   1 MDDGGHREngRHKAAAQGQWLMQHQpSMKQVMSIIAERDAAIQERNLAISEKKAAVAERDMAFLQRDTAIAERNNAIMERDSALTALQYR 90 
                          999999988898886554423332212359************************************************************ PP

            GAGA_bind  88 ensla.......salpvgvqvlsgtksidslqqlse.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
                          ens++       sa+p+g+q+++g+k++++ +++++       pql+++a+e+re+e ++ lp++  a +a e++k+k+++r k+pk+++
  Araha.6463s0004.1.p  91 ENSMVtaasanmSACPPGCQISRGVKHLHHPHMHHHhqhqhhiPQLTENAYETREMEPNDGLPTSPPAGSALESAKPKRGKRVKDPKATT 180
                          ***9999999999*****************999766799999************************************************ PP

            GAGA_bind 164 akkkkkksekskkkvkkesad.er.......................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnG 228
                          ++ ++k+++k+++kvkkes+d  +                       sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnG
  Araha.6463s0004.1.p 181 QTTANKRGPKNQRKVKKESDDdLNkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNG 270
                          *******************885448********************************88******************************* PP

            GAGA_bind 229 GWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhWAkHGtnkfvtir 301
                          GWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhWAkHGtn+++ti+
  Araha.6463s0004.1.p 271 GWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHWAKHGTNRYITIK 344
                          ************************************************88***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.6E-1821344IPR010409GAGA-binding transcriptional activator
PfamPF062178.3E-1031344IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDDGGHRENG RHKAAAQGQW LMQHQPSMKQ VMSIIAERDA AIQERNLAIS EKKAAVAERD  60
MAFLQRDTAI AERNNAIMER DSALTALQYR ENSMVTAASA NMSACPPGCQ ISRGVKHLHH  120
PHMHHHHQHQ HHIPQLTENA YETREMEPND GLPTSPPAGS ALESAKPKRG KRVKDPKATT  180
QTTANKRGPK NQRKVKKESD DDLNKIMFVK TTHDYTEEDS SKHILIGSKS DWKSQEMVGL  240
NQVVYDETTM PPPVCSCTGV LRQCYKWGNG GWQSSCCTTT LSMYPLPALP NKRHARVGGR  300
KMSGSAFNKL LSRLAAEGHH DLSNPVDLKD HWAKHGTNRY ITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6463s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885640.0AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence.
GenBankAY3805720.0AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870282.10.0LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE6
SwissprotQ8L9990.0BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A178UIB60.0A0A178UIB6_ARATH; BPC6
STRINGCagra.9562s0001.1.p0.0(Capsella grandiflora)
STRINGXP_010442173.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.10.0basic pentacysteine 6