PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6418s0010.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | SBP | ||||||||
Protein Properties | Length: 431aa MW: 48019.6 Da PI: 8.6864 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.7e-40 | 178 | 253 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ Araha.6418s0010.2.p 178 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 253 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-33 | 173 | 239 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.795 | 175 | 252 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-38 | 176 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-31 | 178 | 251 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MECNEKPSFQ WELENLISFG TSSAEIPRKL KPMEWEIDGF DCTSLYSSSF SAVAYGGSSG 60 SDLANAFSKS SKSTSISSSS AEVRTHNFTS EAGESLPGEL GSSEEFAKGI DTSPSLELSF 120 GSGDPVLGLK LGKRTYFEDF WEVENAKGLG LPVSLASSSV SPVKKSKSIP QRLQTPHCQV 180 EGCNLDLSSA KDYHRKHRIC ENHSKFPKVV VSGVERRFCQ QCSRFHCLSE FDEKKRSCRR 240 RLSDHNARRR KPNPGRTYDG KPQVDFVWNR FALIHPRSEE KFLWPSSKPV PSRGLMSQPA 300 KTETSNKLFT EHSRFGLLDP KTKTARTELF NKEKVTISSH MGTSQDLDGA LSLLSNSTSW 360 VSSDQPRRFT LDHHPTSNVQ PVANRSATQL NSVSRYWQPE PPTVEGPTAL HRNGVGQFNE 420 NCFSLNQFYN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 178 | 251 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 250 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6418s0010.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ011625 | 0.0 | AJ011625.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002863674.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868863.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868869.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868875.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868882.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868888.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_020868894.1 | 0.0 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | D7MP97 | 0.0 | D7MP97_ARALL; Uncharacterized protein | ||||
STRING | scaffold_800740.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Araha.6418s0010.2.p |