PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.6366s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 336aa MW: 38008.6 Da PI: 6.4398 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.7 | 7.7e-06 | 11 | 42 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 r C+ +++ + +C+ ++ lC C + H Araha.6366s0014.1.p 11 HRLCDYCDSSVALVYCKADSAKLCLACDKQVH 42 578**************************999 PP | |||||||
2 | zf-B_box | 21.5 | 4.7e-07 | 56 | 96 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvp 41 C+ +++ + +lfCe+ ++ lC++C ++H H+++p Araha.6366s0014.1.p 56 LCDSCHDSPSSLFCETERSVLCQNCDWQHHTAssslHSRRP 96 7***************************7744778887765 PP | |||||||
3 | CCT | 60.3 | 6.6e-21 | 290 | 333 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+R++eK+irYesRK++AesR R++GrF+k+a Araha.6366s0014.1.p 290 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAA 333 899***************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 9.0E-13 | 9 | 56 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.381 | 9 | 56 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.37E-6 | 12 | 56 | No hit | No description |
PROSITE profile | PS50119 | 10.096 | 52 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.60E-8 | 56 | 96 | No hit | No description |
SMART | SM00336 | 0.4 | 57 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.743 | 290 | 332 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.2E-15 | 290 | 332 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MEEEEGHQQR HRLCDYCDSS VALVYCKADS AKLCLACDKQ VHVTNQLFAK HFRSLLCDSC 60 HDSPSSLFCE TERSVLCQNC DWQHHTASSS LHSRRPFEGF TGCPSVPELL AIVGLDDLTL 120 DSGLLWESPE IFSLNDLVVS GGSGTHNFRA TDVPPLPKNR HATCGKYKAE MIRQLRGLAR 180 SERSCLKFET PEAEMDAGFQ FLAPDLFSTS ELESGLKWFD QQDHEDFPYC SLLKNSSQQS 240 DEKPENVDRE SSSVMVPVSD GLNRCEEEIV MVPVCTSTRS TTHEINSLER NSALSRYKEK 300 KKSRRYEKHI RYESRKVRAE SRTRIRGRFA KAADP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.6366s0014.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT023413 | 0.0 | BT023413.1 Arabidopsis thaliana At2g47890 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874876.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
Refseq | XP_020884406.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
Swissprot | O82256 | 0.0 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | D7LHD3 | 0.0 | D7LHD3_ARALL; Zinc finger (B-box type) family protein | ||||
STRING | fgenesh2_kg.4__3038__AT2G47890.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47890.1 | 0.0 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.6366s0014.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|