PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.6346s0001.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 334aa MW: 37268.6 Da PI: 7.7926 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.8 | 3.2e-37 | 48 | 171 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a +i +l++ +++ ++++++++++ Araha.6346s0001.2.p 48 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPSINTNFD--YlDENQNQNQNQ------- 128 689***********************************************************9944444..323333333333....... PP TCP 91 aksaakskksqksaasalnlak.esrakarararertrekmriknk 135 +++ +s +s++s l+l++ e r kar+rarert+++ ++ + Araha.6346s0001.2.p 129 ---TKSAGSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDLQ 171 ...33455667777778999999**************999887755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-32 | 49 | 131 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.788 | 50 | 108 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.461 | 148 | 166 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MEVDEDIELQ KHQEQSRKLQ RLSDDNSGII MRNWNNPSSR IIRVSRASGG KDRHSKVLTS 60 KGLRDRRIRL SVATAIQFYD LQDRLGFDQP SKAVEWLINA ASDSITDLPS INTNFDYLDE 120 NQNQNQNQTK SAGSSGTSES SLLSLSRTEI RGKARERARE RTAKERDKDL QNAQSSFTQL 180 LTGGFDQQPS NRNWTGGSDC FNPVQLQLPN SSSSSLHQEP MNQNNHPFSF VPDYNFGISS 240 SSSAINGGYS SRGTLQSNSQ SLFLNNNITQ RSSISSSSSS SSPMDSQSIS FFMATPPPLD 300 HHNHQLPETF DGRLYLYYGE GNRSSDDKGK DRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 55 | 109 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00169 | DAP | Transfer from AT1G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.6346s0001.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC073506 | 0.0 | AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence. | |||
GenBank | AY035008 | 0.0 | AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | AY057672 | 0.0 | AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds. | |||
GenBank | AY113898 | 0.0 | AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867406.1 | 0.0 | transcription factor TCP24 | ||||
Swissprot | Q9C758 | 0.0 | TCP24_ARATH; Transcription factor TCP24 | ||||
TrEMBL | D7KES0 | 0.0 | D7KES0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__3195__AT1G30210.2 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-149 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.6346s0001.2.p |
Publications ? help Back to Top | |||
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