PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araha.6257s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 304aa MW: 34556 Da PI: 5.0545 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + ng r++lg+f taeeAa a+++a+ +++g Araha.6257s0001.1.p 109 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 159 8********.**********44465..************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-29 | 108 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-20 | 109 | 169 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-12 | 109 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-35 | 109 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 109 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.03E-28 | 109 | 168 | No hit | No description |
PRINTS | PR00367 | 6.9E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MAFGNVQEPD GEILKNVWAN FIRKPQTDKS IHVSEVSRTW ETLPTTLDDI PEGSKERFPR 60 LDMSMEALEW TEILDVIASF PSETNHDPLT NPTTDSCFLP SRVSCKTRKY RGVRRRPWGK 120 FAAEIRDSTR NGVRVWLGTF QTAEEAAMAY DKAAVRIRGT QKAHTNFQLE TVIKAMEMDC 180 YPNYYPINSS NTSDTLRSSR KIGLRTGKEA IKAYDEVVDG MVENHCALRY CSTKEYSEAC 240 GLPGIEETWL GLRKRRRSNE DCMCQEVDMK KTVTGEETLC DVFGLFEFED LGSDYLDTLL 300 SSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-24 | 106 | 169 | 2 | 64 | ATERF1 |
3gcc_A | 2e-24 | 106 | 169 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 252 | 256 | RKRRR |
2 | 252 | 257 | RKRRRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araha.6257s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY560868 | 0.0 | AY560868.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g18450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002867990.1 | 0.0 | ethylene-responsive transcription factor ERF091 | ||||
Swissprot | O49515 | 0.0 | ERF91_ARATH; Ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | A0A178V3M6 | 0.0 | A0A178V3M6_ARATH; Uncharacterized protein | ||||
STRING | scaffold_702579.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18450.1 | 0.0 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Araha.6257s0001.1.p |