PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6236s0009.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 289aa    MW: 31790.9 Da    PI: 9.576
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6236s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573773.2e-244703298
               DUF573 32 ddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98
                          d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq++fe+s+kiW++
  Araha.6236s0009.1.p  4 PDTAPFYEQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQSTFEISRKIWNQ 70
                         59***************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.7E-22469IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
SHPPDTAPFY EQIKSKLQLD FNKNQLVEKL RRLKKKYRNV MSKISSGKEV FFKSPHDQST  60
FEISRKIWNQ TGKIIGFEDN NVMDFEETNN HHNTNGNYST FNSPSSNPTL ELDSENGVEK  120
KLTMSSSSVS RKRSRSRIGK IEEDNKPVIT PSDGQIPNAA SNVNLNETAA AVGIGGNLGG  180
LIEETVKNCV SPVIKEMMNG TTSMMMAAMG GGFPGGGVGH GFGSLSPMFT RPLNFGFGVE  240
GGGNKAVADE RWRKQQILEL EVYSRRLELV QEQIRTTLNE LKTMPSGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6236s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0701360.0AY070136.1 Arabidopsis thaliana AT3g04930/T9J14_12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002882384.10.0probable transcription factor At3g04930
SwissprotQ9CAV71e-155STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLD7L3040.0D7L304_ARALL; Transcription regulator
STRINGfgenesh2_kg.3__469__AT3G04930.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-140DNA-binding storekeeper protein-related transcriptional regulator