PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.61095s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 320aa    MW: 36615.2 Da    PI: 6.2878
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.61095s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13127178155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i++  +++I++L+
  Araha.61095s0001.1.p 127 QRMTHIAVERNRRKLMNEYLSVLRSLMPDS---YVQRCDQASIVRGSINFIRELE 178
                           79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-10126182No hitNo description
SuperFamilySSF474599.68E-15126192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-8132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEGLFLQH DNMFRYNEEA YSNIYTEDEP HFYDLQASLG FLDSQTENYN STFLQEDYYE  60
NTTTFLHQPL PELANSEANI MANGISSGSP NCDMSYHRDS EINTTRNKKA ARRRTRVKKN  120
KEEITNQRMT HIAVERNRRK LMNEYLSVLR SLMPDSYVQR CDQASIVRGS INFIRELEHR  180
LHLLNANREQ NENSLSCRDI SSATPFSDAF KLPQISMGSS AVSENVVLEN ALADIEVSLV  240
ECHASLKIRS RRRPKILLNL VSGLQSLGFI ILHLNVSTVS DFILYCFSTK MEDFCKLNSV  300
ADISTAVHEI LRIHDDCQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127138RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.61095s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894606.10.0transcription factor bHLH94
SwissprotQ9C7T42e-62BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ40.0D7KPZ4_ARALL; Uncharacterized protein
STRINGscaffold_105519.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]