PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.60507s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20129.8 Da PI: 5.1332 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.3e-19 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp + kr++lg+f t eeAa+a++ a+++++g+ Araha.60507s0005.1.p 21 RYRGVRRRP-WGRYAAEIRDPI----KkKRVWLGSFNTGEEAARAYDSAAREFHGA 71 69*******.**********72....35*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.96E-22 | 21 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-31 | 21 | 78 | No hit | No description |
PROSITE profile | PS51032 | 23.907 | 21 | 78 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-13 | 21 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-35 | 21 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MATKKKKVTK AVAVGKSKEL RYRGVRRRPW GRYAAEIRDP IKKKRVWLGS FNTGEEAARA 60 YDSAAREFHG AKAKTNFPLL GKDGNASVTP VNNALSETAC DGTLPLDCQN LLSPGVAEAV 120 AGFFLDPSDA TALKEELDRV CPDQFESIDM GLSIGPQTAV EEPDTFSAVD CELKMEPDLD 180 LNLDP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 21 | 78 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 44 | RRRPWGRYAAEIRDPIKKKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00124 | DAP | Transfer from AT1G03800 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.60507s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB047649 | 1e-104 | AB047649.1 Arabidopsis thaliana AtERF10 gene for ERF domain protein 10, complete cds. | |||
GenBank | AC003027 | 1e-104 | AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence. | |||
GenBank | AY560879 | 1e-104 | AY560879.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g03800) mRNA, complete cds. | |||
GenBank | BT029020 | 1e-104 | BT029020.1 Arabidopsis thaliana At1g03800 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-104 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002892180.1 | 1e-109 | ethylene-responsive transcription factor 10 | ||||
Swissprot | Q9ZWA2 | 3e-99 | ERF77_ARATH; Ethylene-responsive transcription factor 10 | ||||
TrEMBL | D7KD81 | 1e-108 | D7KD81_ARALL; Uncharacterized protein | ||||
STRING | scaffold_100331.1 | 1e-109 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 3e-83 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Araha.60507s0005.1.p |
Publications ? help Back to Top | |||
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