PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6019s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 347aa    MW: 37826.4 Da    PI: 8.0518
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6019s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-3949109262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          k++a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+s+
  Araha.6019s0002.1.p  49 KDQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNIPVGGGSRKNKRSH 109
                          7899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-2842101IPR003851Zinc finger, Dof-type
PfamPF027013.4E-3350107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9153107IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDTAQWPQEI VVKPLEEIVT NTRPKPQPQP LQPQQPSTAG GERKARPEKD QAVNCPRCNS  60
TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNIPVGG GSRKNKRSHS SSSDISNNNH  120
SDSTQPATKK HLSDHRHHLM SMSQQGLTGQ NPKFLETTQQ DLNLGFPPHG MIRTNFTDLI  180
HNIGNNSNNT NKSNNNNNPL LVSSCSAMAT SSLDLIRNNS NNGNSSNSSF MGFPVHNQDP  240
ASGGFSMQDH YKPCNTNTTL LGFSLDHHQN NGFHGGFQGG EEGGEGGDDV NGRHLFPFED  300
LKLPVSSSSA TINVDINEHQ KRGSGSDAAA TSGGYWTGML SGGSWC*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6019s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171530.0AK317153.1 Arabidopsis thaliana AT4G24060 mRNA, complete cds, clone: RAFL21-94-L04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869742.10.0dof zinc finger protein DOF4.6
SwissprotQ8LAP80.0DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLD7M8Y20.0D7M8Y2_ARALL; Predicted protein
STRINGAl_scaffold_0007_17420.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-162Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]