PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.59191s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 371aa MW: 40536.9 Da PI: 5.3165 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 4.9e-10 | 204 | 251 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Araha.59191s0002.1.p 204 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 251 8**************************....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-17 | 198 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.38E-11 | 198 | 255 | No hit | No description |
PROSITE profile | PS50888 | 15.542 | 200 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-17 | 200 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-7 | 204 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-10 | 206 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MNMDKETEQT LNYLPLGQSD PFGNGSEGTI GDFLGRYCNN PQEISPLTLQ SFSMNSQISE 60 NFPISGGIRF PPYPGQFGSD REFGVLGSQP TTQESNKSSL LDPDSVSDRV HTTKSNSRKR 120 KSIPSGNGKE SPASSSLTAS NSKVSGENGG SKGGKRSKQD EAGSSKNGVE KCDSKGDNKD 180 DAKPPEAPKD YIHVRARRGQ ATDSHSLAER ARREKISERM TLLQDLVPGC NRITGKAVML 240 DEIINYVQSL QRQVEFLSMK LATVNPRMEF NANAALSTEM IQPGESLTQS LYAMACSEQR 300 LPSAYYSLGK NMPRFSDTQF PSNDGFVQAE TPGFWENNDL QSIVQMGFGD IQQQSNNNCS 360 EPTLQMKLEP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 121 | SRKRKS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00376 | DAP | Transfer from AT3G23690 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.59191s0002.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065441 | 0.0 | AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. | |||
GenBank | AY096536 | 0.0 | AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020887229.1 | 0.0 | transcription factor bHLH77 | ||||
Swissprot | Q9LK48 | 0.0 | BH077_ARATH; Transcription factor bHLH77 | ||||
TrEMBL | D7L3G1 | 0.0 | D7L3G1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_2564 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7406 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23690.1 | 0.0 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.59191s0002.1.p |
Publications ? help Back to Top | |||
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