PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.59149s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 231aa MW: 26169.9 Da PI: 4.3303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.59149s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	1.9e-10	135	182	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rEr RR+++N++f L ++l + + +K +K +iL A++ +++L Araha.59149s0001.1.p 135 TKACRERMRREKLNERFMDLSSVLEPG---RTPKTDKPAILDDAIRILNQL 182 5678********************8...8**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.551	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-7	135	185	No hit	No description
Pfam	PF00010	1.0E-7	135	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.5E-10	137	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.76E-13	137	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-11	139	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MYPSLNDDDF VSDLFCFDQS NGAELDDYTQ FGVNLQPDQE DTFPDFVSYG VNLQQDPEEV 60 FSIGAAQLDL SSYNGVLSQE PEQVGQKDCG IVQEDEVEIN SGSSGGAVKQ EQEHLDDDCS 120 RKRARTRSCS RGGGTKACRE RMRREKLNER FMDLSSVLEP GRTPKTDKPA ILDDAIRILN 180 QLRDEAHKLE ETNQKLLEEI KSLKAEKNEL REEKLVLKAD KEKTEQQLKS M

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00102	PBM	Transfer from AT4G14410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.59149s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY088053	0.0	AY088053.1 Arabidopsis thaliana clone 40736 mRNA, complete sequence.
GenBank	AY102106	0.0	AY102106.1 Arabidopsis thaliana AT4g14410/dl3245w mRNA, complete cds.
GenBank	AY133565	0.0	AY133565.1 Arabidopsis thaliana At4g14410/dl3245w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872680.1	1e-165	transcription factor bHLH104
Refseq	XP_020872681.1	1e-165	transcription factor bHLH104
Swissprot	Q8L467	1e-150	BH104_ARATH; Transcription factor bHLH104
TrEMBL	D7MH23	1e-149	D7MH23_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.7__2895__AT4G14410.2	1e-149	(Arabidopsis lyrata)
STRING	XP_010435125.1	1e-149	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14410.1	1e-152	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.59149s0001.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Wang C,Yao X,Yu D,Liang G Fe-deficiency-induced expression of bHLH104 enhances Fe-deficiency tolerance of Arabidopsis thaliana. Planta, 2017. 246(3): p. 421-431 [PMID:28451750] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Min JH, et al. A basic helix-loop-helix 104 (bHLH104) protein functions as a transcriptional repressor for glucose and abscisic acid signaling in Arabidopsis. Plant Physiol. Biochem., 2019. 136: p. 34-42 [PMID:30639920]