PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5855s0004.2.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 29482.7 Da PI: 4.8916

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5855s0004.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	1.9e-17	68	121	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k Araha.5855s0004.2.p 68 KKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 121 456899**********************************************99 PP
2	HD-ZIP_I/II	122.8	1.7e-39	67	159	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr++++l++ene L++e+++L+++ Araha.5855s0004.2.p 67 EKKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTENQKLQAQ 156 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Araha.5855s0004.2.p 157 VMA 159 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-19	49	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-18	56	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.119	63	123	IPR001356	Homeobox domain
SMART	SM00389	2.0E-17	66	127	IPR001356	Homeobox domain
CDD	cd00086	2.67E-14	68	124	No hit	No description
Pfam	PF00046	8.1E-15	68	121	IPR001356	Homeobox domain
PRINTS	PR00031	4.5E-6	94	103	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	98	121	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.5E-6	103	119	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.6E-4	123	166	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.5E-15	123	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009739	Biological Process	response to gibberellin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSCNNNGLAF FPENFTLQNH HQEEEDHPQL LQDFHGKRSP MNNVQGFCNL DMNGDEEYSD 60 DGSKMGEKKR RLNMEQLKAL EKNFELGNKL ESDRKLELAR ALGLQPRQIA IWFQNRRARS 120 KTKQLEKDYD MLKRQFESLR DENEVLQTEN QKLQAQVMAL KSREPIESIN LNKETEGSCS 180 DRSENISGDI RPPEIDSQFA VGHPPTTTTM QFFQNSSSEQ RMVKEENSIS NMFCGIDDQS 240 GFWPWLDQQQ HYN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	RRARSKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5855s0004.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellic acid (GA3). {ECO:0000269\|PubMed:17387478}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228056	0.0	AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBank	AY084913	0.0	AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBank	BT009727	0.0	BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020870953.1	0.0	homeobox-leucine zipper protein ATHB-23 isoform X2
Swissprot	Q8LFD3	0.0	ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBL	D7KPM4	0.0	D7KPM4_ARALL; ATHB23
STRING	fgenesh2_kg.1__2657__AT1G26960.1	0.0	(Arabidopsis lyrata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26960.1	0.0	homeobox protein 23

Link Out ? help Back to Top
Phytozome	Araha.5855s0004.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]