PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.5855s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 29800.1 Da PI: 4.8916 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.5 | 2e-17 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k Araha.5855s0004.1.p 71 KKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 124 456899**********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr++++l++ene L++e+++L+++ Araha.5855s0004.1.p 70 EKKRRLNMEQLKALEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTENQKLQAQ 159 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Araha.5855s0004.1.p 160 VMA 162 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 52 | 128 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 59 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-17 | 69 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-14 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 8.2E-15 | 71 | 124 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 4.6E-6 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.6E-6 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.6E-4 | 126 | 169 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.6E-15 | 126 | 166 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSCNNNGLAF FPENFTLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE 60 YSDDGSKMGE KKRRLNMEQL KALEKNFELG NKLESDRKLE LARALGLQPR QIAIWFQNRR 120 ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TENQKLQAQV MALKSREPIE SINLNKETEG 180 SCSDRSENIS GDIRPPEIDS QFAVGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID 240 DQSGFWPWLD QQQHYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARSKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.5855s0004.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228056 | 0.0 | AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15. | |||
GenBank | AY084913 | 0.0 | AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence. | |||
GenBank | BT009727 | 0.0 | BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870952.1 | 0.0 | homeobox-leucine zipper protein ATHB-23 isoform X1 | ||||
Swissprot | Q8LFD3 | 0.0 | ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23 | ||||
TrEMBL | D7KPM4 | 0.0 | D7KPM4_ARALL; ATHB23 | ||||
STRING | fgenesh2_kg.1__2657__AT1G26960.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26960.1 | 0.0 | homeobox protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Araha.5855s0004.1.p |
Publications ? help Back to Top | |||
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