PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5843s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 364aa    MW: 42547 Da    PI: 7.0405
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5843s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-18163209148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+ Ede lv+ vk+ G+++W++Ia++++ gR +kqc++rw+++l
  Araha.5843s0002.1.p 163 KGQWTPTEDEMLVKMVKRNGMKNWTSIAKMFQ-GRVGKQCRERWHNHL 209
                          799*****************************.*************97 PP
2Myb_DNA-binding49.59.9e-16215257145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ W++eEd++l++++k  G++ W+ Ia++++ gR+++ +k++w+
  Araha.5843s0002.1.p 215 KNYWSEEEDQILIEVHKIIGNK-WTEIAKRLP-GRSENIVKNHWN 257
                          568*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.351158213IPR017930Myb domain
SuperFamilySSF466893.26E-30162256IPR009057Homeodomain-like
SMARTSM007171.6E-15162211IPR001005SANT/Myb domain
PfamPF002495.6E-17163209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-22164213IPR009057Homeodomain-like
CDDcd001671.60E-13166209No hitNo description
PROSITE profilePS5129418.643214264IPR017930Myb domain
SMARTSM007171.3E-14214262IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-20214262IPR009057Homeodomain-like
PfamPF002491.4E-14215257IPR001005SANT/Myb domain
CDDcd001671.41E-10218260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MYHQNQISST PNQNSDPNNW DIQNRLFSRH PSIEIPSKYP FMGITSFPNT NVFEEFHYNI  60
TNDLKFPMTY NTQFPVISEG ISYNMHDFQE NTMHGYTAHN QGLIIGCHEP VPAMVESQQF  120
NVSESEGINL ISQSESVTKE TINKRQDQVM FKTDHKKKDI IIKGQWTPTE DEMLVKMVKR  180
NGMKNWTSIA KMFQGRVGKQ CRERWHNHLR PDIKKNYWSE EEDQILIEVH KIIGNKWTEI  240
AKRLPGRSEN IVKNHWNATK RRLHTVRTKK SDALPPRNNT LENYIRSITI NNGLMNREVD  300
SITTNSEIVT TKCENIVDEV MNLNLDATTC FYVPEQVSLT WGYDFTKFHE PIDDTWMLMT  360
GWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-421612625106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of target genes (PubMed:27681170). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner (PubMed:18695688). Together with MYB118, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5843s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2 but repressed by MYB118. {ECO:0000269|PubMed:27681170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4470190.0DQ447019.1 Arabidopsis thaliana clone pENTR221-At5g40360 myb family transcription factor (At5g40360) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568581.10.0myb domain protein 115
SwissprotQ1PDP90.0MY115_ARATH; Transcription factor MYB115
TrEMBLD7MJ980.0D7MJ98_ARALL; Uncharacterized protein
STRINGAT5G40360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40360.10.0myb domain protein 115
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]