PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5748s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 142aa    MW: 16130 Da    PI: 8.7214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5748s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.8e-08114140430
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                          +h+ +Er RR++iN+++  L++l+P +
  Araha.5748s0004.1.p 114 SHSLAERVRREKINERLKCLQDLVPGC 140
                          8************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-8108141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-6108142No hitNo description
PROSITE profilePS5088812.405110142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-9113140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-5114140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MARFEPYNYN IGLNPFFAQI NQNPELINLD SPASTPSSFM LFSNGALVDA DHNNSLFSPN  60
LVHGGTVRKG NKEESGSKRR RKRSEEEEAM NEEETQKPKD VVHVRAKRGQ ATDSHSLAER  120
VRREKINERL KCLQDLVPGC YK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5748s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1757570.0AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12.
GenBankAY0888850.0AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence.
GenBankDQ4462890.0DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds.
GenBankDQ6528590.0DQ652859.1 Arabidopsis thaliana clone 0000017109_0000011994 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867835.11e-81transcription factor bHLH75 isoform X3
SwissprotA4D9988e-81BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A078HE872e-77A0A078HE87_BRANA; BnaA08g19410D protein
TrEMBLA0A397YL422e-77A0A397YL42_BRACM; Uncharacterized protein
STRINGAT1G25330.14e-79(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-73bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]