PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5748s0003.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 286aa    MW: 32931.1 Da    PI: 6.7796
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5748s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-162067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd ll +++   G g+W++ a+  g++Rt+k+c++rw++yl
  Araha.5748s0003.1.p 20 KGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRTGKSCRLRWLNYL 67
                         79********************************************97 PP
2Myb_DNA-binding52.41.2e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Araha.5748s0003.1.p  73 RGNLTPQEQLLILELHSKWGNR-WSKIAKYLP-GRTDNDIKNYWRT 116
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3531567IPR017930Myb domain
SuperFamilySSF466891.95E-3018114IPR009057Homeodomain-like
SMARTSM007171.2E-131969IPR001005SANT/Myb domain
PfamPF002491.9E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-222174IPR009057Homeodomain-like
CDDcd001672.02E-92267No hitNo description
PROSITE profilePS5129426.19768122IPR017930Myb domain
SMARTSM007171.9E-1572120IPR001005SANT/Myb domain
PfamPF002499.9E-1673116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-2375121IPR009057Homeodomain-like
CDDcd001672.65E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSNLTKKKFN GNEEGAEQRK GPWTLEEDTL LTNYISHNGE GRWNLLAKSS GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAK YLPGRTDNDI KNYWRTRVQR  120
QARQLNIDSN SRKFLEVVRS FWVPRLIHEI KDNSNTNSIK AADSPDLVGP VLRDKNDLCF  180
INNMDCSTSM SVDLKKISQF MHLSDLETTT SLEGSRGSSS QCVSEDYSSF PCLEEEYMVA  240
TMGNSDILAL QGCHVADSMY EEDVTQDPMW NMDDIWQFKE YAHFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25201227108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5748s0003.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3348150.0AF334815.2 Arabidopsis thaliana putative transcription factor (MYB116) mRNA, complete cds.
GenBankAY5195580.0AY519558.1 Arabidopsis thaliana MYB transcription factor (At1g25340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867831.10.0transcription factor MYB62
SwissprotQ9C9G71e-104MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A178WKY40.0A0A178WKY4_ARATH; MYB116
TrEMBLQ94FU00.0Q94FU0_ARATH; MYB transcription factor
STRINGAT1G25340.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.10.0myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]