PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.57005s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

GeBP

Protein Properties

Length: 244aa MW: 27857.5 Da PI: 9.1728

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.57005s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	93.3	2.6e-29	48	141	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 +r w+++ e+++L G+ d+++++++s+++d++a+y+ +++si +++sk+qlv+K+ +LK +f +++++++ gk sf+++hd+++f+ls Araha.57005s0001.1.p 48 KRNWTKTEELLILEGIADYEKENKSSYTSDWNAIYDRIRDSIGSDFSKKQLVDKVYKLKVRFGDNQARSNAGKRLSFTNAHDKQVFKLS 136 89************************************************************************************* PP DUF573 93 kkiWg 97 iWg Araha.57005s0001.1.p 137 TVIWG 141 **8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.2E-26	48	141	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
DYSNSDCFEI RKHEDDDISV SEMMLRKRKK LKTATTLLEP SSSSGAWKRN WTKTEELLIL 60 EGIADYEKEN KSSYTSDWNA IYDRIRDSIG SDFSKKQLVD KVYKLKVRFG DNQARSNAGK 120 RLSFTNAHDK QVFKLSTVIW GNNKTKYEVM DQTKERVSNA IDDGEKEKCE DLNVLQDALE 180 VAAAFPSLGI YQQKSLLQNL KNLGATQRKK LTDEWKALLA EDMQLGIKKQ SFYAKLVKEG 240 FSA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	LRKRKKL
2	25	29	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.57005s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002868615.1	1e-167	GLABROUS1 enhancer-binding protein-like 3 isoform X2
Swissprot	Q9SJM4	6e-32	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	D7MIY8	1e-166	D7MIY8_ARALL; Uncharacterized protein
STRING	scaffold_703846.1	1e-167	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-33	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Araha.57005s0001.1.p

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]