PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5599s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 1710aa    MW: 192309 Da    PI: 5.0394
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5599s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-184196257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ qle+Le+++ ++ yps+++r++L++kl+L++rq ++WF+ rR k+kk
  Araha.5599s0006.1.p 41 PKRQMKTPFQLETLEKVYSEETYPSEATRADLSEKLDLSDRQLQMWFCHRRLKDKK 96
                         69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-182696IPR009057Homeodomain-like
SuperFamilySSF466895.99E-163297IPR009057Homeodomain-like
PROSITE profilePS5007116.2283797IPR001356Homeobox domain
SMARTSM003891.0E-1639101IPR001356Homeobox domain
PfamPF000463.2E-164196IPR001356Homeobox domain
CDDcd000869.85E-144296No hitNo description
SMARTSM005713.1E-23551610IPR018501DDT domain
PROSITE profilePS5082717.698551610IPR018501DDT domain
PfamPF027912.3E-17552607IPR018501DDT domain
PfamPF050669.0E-16732799IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.4E-6934973IPR028942WHIM1 domain
PfamPF156131.9E-1211071179IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1710 aa     Download sequence    Send to blast
MEMGSDGDED QIRSVGDVGG NHLNKKKKID NSSSKDGRVK PKRQMKTPFQ LETLEKVYSE  60
ETYPSEATRA DLSEKLDLSD RQLQMWFCHR RLKDKKDGQS KKPAKSAVAV QSAALASSVN  120
DLPAAGSVPE QDSRSDSGSE SGCSPYSNSR RNFASGSSSS RAELDEYDTM GKASYESRLS  180
TMVRRAIVCI EAQLGEPLRD DGPILGMEFD PLPPGAFGTP IAMQKHLVHP YESNVYERYD  240
ARPRRSHAAA RSFHEQQSLD DPSSFTPEMY GRYSENHARG MDYEIARSRS SSFMHANGPL  300
PRSYVTPGHV SRNCSTSQQD MPIPIESAHR GDRFLLEKDS SVLGTEDPYL LPDGVRKSND  360
VHRKGKINDD RLGRGSEIRE NHGPKDLEKL EIQRKKNEER MRKEMEKNER ERRKEEERLM  420
RERIKEEERL QREQRREIER REKFLQRENE RAEKKKQKDE IRREKDAIRR KLAIEKATAR  480
RIAKESMDLI EDEQLELMEL AAISKGLPSV LQLDHDTLQN LEVYRDSLST FPPKSLQLKM  540
PFALSPWKDS DETVGNLLMV WKFLISFSDV LDLWPFTLDE FIQAFHDYDS RLLGEIHVTL  600
LRSIIRDIED VARTPFSGIG NNQYTTANPE GGHPQIVEGA YAWGFDIRSW KKHLNPLTWP  660
EILRQLALSA GFGPRLKKKH SRLTNTGDKD EAGCEDIIST IRNGSAAESA FASMREKGLL  720
APRKSRHRLT PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA  780
LTRDVKLFER IAPSTYCVRA PYVKDPADGE AILADARKKI RAFENGFTGP EDVNDLERDE  840
EFEIDIDEDP EVDDLATLAS ASKSAVLGEA NVLSGKEGDT MFCDVKADVK SEPEKEFPSP  900
PPSSMKSIVP QHSERFKDTV VGCVDTVVDE SNQGQSWIQG LTEGDYCHLS VEERLNALVA  960
LVGIANEGNS IRAGLEDRME AANSLKKQMW AEAQLDNSCM RDVLKLDFQN LAGSKTESTM  1020
GLPIIQSSTR ERDSFDRDPS QLLDETKPLD DLSNNLHKSS AERALINQDA NISQENCSSQ  1080
LGYASKRSRS QLKSYIGHKA EEVYPYRSLP LGQDRRHNRY WHFAVSVSKS DPCSGLLFVE  1140
LHDGKWLLID SEEAFDILVA SLDMRGIRES HLRIMLQKIE GSFKENACKN IKLDRNPFLK  1200
EKSIVNHSPT DSVSPSSAIS GSNSDSMETS TSIRVELGRN DTENKNLSKR FHDFQRWMWT  1260
ETYSSLPSCA RKYGKKRSEL LATCDACVAS YLSEYTHCTS CHQRLDVVDS SEILDSGLTV  1320
SPLPFGVRLL KPLLVFLEAS VPDEALESFW TEDKRKFWGF RLNASSSPED LLQVLTSLES  1380
AIKKESLSSN FMSAKELLGA ANADADNPGS VDVLPWIPKT VSAVALRLSE LDASIIYVKP  1440
EKPELIPEDE NEQISLFPGD SPFKGKGPRE QEDQHEVVPN SGNKRNKRAR VSLGSGSNRK  1500
VKRKKAQSGL NKFVVGRRNV AVNSNLMTVE LNHQVPGKGK RTVRKRPERI DEDNDHLVNR  1560
MANIVRPKYE EVEEDEEEEP TFRDIDEDWA AGETPREIDE DWANETPNRM MTPMQVDDES  1620
DNSVGVESED DDGGGQFVDY SQRNKWGLDW NSNPNEAMEE EEVVGVGRVE GEDDAEMSES  1680
SEDDDDDVPA NNAANNYDRE SEGYSSSDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644GRVKPKRQM
28996RRLKDKKD
314971504NRKVKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5599s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866525.10.0homeobox-DDT domain protein RLT1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLD7KCW80.0D7KCW8_ARALL; HB-1
STRINGfgenesh2_kg.1__3015__AT1G28420.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1