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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araha.5580s0003.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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| Family | ARF | ||||||||
| Protein Properties | Length: 1008aa MW: 111064 Da PI: 6.7293 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 72.7 | 4.6e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84
f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +
Araha.5580s0003.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfSMQPPCQ-ELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR 215
99*****************************98888885.9************************************************5 PP
-SSSEE..EEEEE-S CS
B3 85 dgrsefelvvkvfrk 99
+ +++l+++++r+
Araha.5580s0003.1.p 216 --DGKAQLLLGIRRA 228
..4678889999997 PP
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| 2 | Auxin_resp | 117.7 | 9.3e-39 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aaha +++s+F+++YnPra+++eFvv+++k+ ka++ +vs+GmRf+m fete++ rr++Gtv+g+sdldpvrW+nS+Wr+L+
Araha.5580s0003.1.p 253 AAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 335
799******************************************************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.23E-42 | 117 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 121 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 8.53E-20 | 126 | 227 | No hit | No description |
| Pfam | PF02362 | 2.6E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.125 | 127 | 229 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 9.7E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 8.4E-34 | 253 | 335 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 5.5E-10 | 878 | 966 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 24.819 | 880 | 964 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 2.22E-8 | 893 | 959 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009638 | Biological Process | phototropism | ||||
| GO:0009723 | Biological Process | response to ethylene | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009785 | Biological Process | blue light signaling pathway | ||||
| GO:0010311 | Biological Process | lateral root formation | ||||
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
| GO:0048366 | Biological Process | leaf development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1008 aa Download sequence Send to blast |
MKAPSSNGVS PNPVEGERRN INSELWHACA GPLISLPPAG SLVVYFPQGH SEQVAASMQK 60 QTDFIPSYPN LPSKLICMLH NVTLNADPET DEVYAQMTLQ PVNKYDRDAL LASDMGLKLN 120 RQPNEFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFSM QPPCQELVAK DIHDNTWTFR 180 HIYRGQPKRH LLTTGWSVFV STKRLFAGDS VLFIRDGKAQ LLLGIRRANR QQPALSSSVI 240 SSDSMHIGVL AAAAHANANN SPFTIFYNPR AAPAEFVVPL AKYTKAMYAQ VSLGMRFRMI 300 FETEECGVRR YMGTVTGISD LDPVRWKNSQ WRNLQIGWDE SAAGDRPSRV SVWDIEPVLT 360 PFYICPPPFF RPRFSGQPGM PDDETDMESA LKRAMPWLDN SLEMKDPSST IFPGLSLTQQ 420 QLRTQPLQSH SHHQPQPQQL QQHKLQQQLQ LPQNQLYNGQ QAAQQLQVQQ VSTHHLQPQL 480 VSGSMASSVI TPPPSSLNQS FQQQQQSKQL PQAHHHLGAS TSQSSVIETS KSSSNLMSAP 540 PQETQFPRQV EQQQPPGLNG QNQQTLLQQK AHHAQAQQIF QQSLLEQPHL QFQLLQRLQQ 600 QQQQQQQFLS PQSQLPHHQL QSQQLQQLPP LSQGHQFPSS CTNNGSSTLQ PPQMLVSRPQ 660 EKQNPPVGGG VKAYSGITDG GDAPSSSTSP STNNCQISSS GFLNRSQSGP AILIPDAAID 720 MSGNLVQDLY SKSDMRLKQE LVGQQKSKAS LTDHQLEASA SGTSYGLDGG DNNKQQNFLA 780 PTFGLDGDSR NSLLGGANVD NGFVPDTLLS RGYDSQKDLQ NMLSNYGGVT NDIGTEMSTS 840 AVRTQSFGVP NVPAISNDLA VNDAGVLGGG LWPAQTQRMR TYTKVQKRGS VGRSIDVNRY 900 RGYDELRHDL ARMFGIEGQL EDPQTSDWKL VYVDQETDIL LVGDDPWEEF VNFVQSLKIL 960 SSAEVQQMSL DGNFAGVPVT NQACSGGDSG NAWRGHYDDN SATSFNR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 1e-169 | 21 | 356 | 51 | 388 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Act as a transcriptional activator of several tropic stimulus-induced (TSI) genes, including SAUR50. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Required for differential growth responses of aerial tissues. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF19. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF5. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:16371470, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araha.5580s0003.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AF042195 | 0.0 | AF042195.1 Arabidopsis thaliana auxin response factor 7 (ARF7) mRNA, complete cds. | |||
| GenBank | AY080595 | 0.0 | AY080595.1 Arabidopsis thaliana unknown protein (At5g20730) mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020879050.1 | 0.0 | auxin response factor 7 | ||||
| Swissprot | P93022 | 0.0 | ARFG_ARATH; Auxin response factor 7 | ||||
| TrEMBL | A0A3N6QIU7 | 0.0 | A0A3N6QIU7_BRACR; Auxin response factor | ||||
| STRING | fgenesh2_kg.6__2115__AT5G20730.1 | 0.0 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2629 | 26 | 65 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G20730.2 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Araha.5580s0003.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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